Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000037_1.0.fa -t ./subsequences/SPP00000037_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete
        Target: gi|357434160|gb|JH378203.1|:subseq(4625130,339258) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00099, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2241
   Query range: 363 -> 854
  Target range: 168168 -> 189929

    364 : SerLysAlaSerGlnGlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnLysL :    383
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerLysAlaSerGlnGlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnLysL
 168169 : TCTAAAGCATCACAAGGTAGCGACCTTGAACAAAATGAAGCCTCAAGAAAGAATAAGA : 168226

    384 : ysLysLysGluLysSerThrSerLysTyrGluValLeuThrValGlnGluProProAr :    402
          |||||||||||||||||.!!||||||||||||||||||||||||||||||||||||||
          ysLysLysGluLysSerAlaSerLysTyrGluValLeuThrValGlnGluProProAr
 168227 : AAAAGAAAGAAAAGTCTGCATCAAAATATGAAGTCCTGACAGTTCAGGAGCCTCCAAG : 168283

    403 : gIleGlu  >>>> Target Intron 1 >>>>  AspAlaGluGluPheProAsnL :    412
          |||||||           1327 bp           ||||||||||||||||||||||
          gIleGlu++                         ++AspAlaGluGluPheProAsnL
 168284 : AATTGAAgt.........................agGATGCTGAGGAATTTCCTAACC : 169640

    413 : euAlaValAlaSerGluArgArgAspArgIleGluThrProLysPheGlnSerLysGl :    431
          |||||||||||||||||||||||||||||||||||! !||||||||||||||||||||
          euAlaValAlaSerGluArgArgAspArgIleGluArgProLysPheGlnSerLysGl
 169641 : TGGCAGTTGCATCCGAAAGAAGAGACAGAATAGAGAGACCGAAATTTCAATCTAAACA : 169697

    432 : nGlnProGln  >>>> Target Intron 2 >>>>  AspAsnPheLysAsnAsnV :    441
          ||||||||||           1416 bp           ! !|||!!.||||||||||
          nGlnProGln++                         ++ValAsnLeuLysAsnAsnV
 169698 : GCAGCCACAGgt.........................agGTTAATTTAAAAAATAATG : 171143

    442 : alLysLysSerGlnLeuProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGl :    460
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLysLysSerGlnLeuProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGl
 171144 : TAAAGAAGAGCCAGCTTCCAGTGCAGTTGGATTTGGGGGGCATGCTGACAGCCCTGGA : 171200

    461 : uLysLysGlnHisSerGlnHisAlaLysGlnSerSerLysProValValValSer{V} :    479
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||{|}
          uLysLysGlnHisSerGlnHisAlaLysGlnSerSerLysProValValValSer{V}
 171201 : GAAGAAGCAGCACTCCCAGCATGCAAAGCAGTCCTCCAAACCAGTGGTGGTCTCA{G} : 171257

    480 :   >>>> Target Intron 3 >>>>  {al}GlyAlaValProValLeuSerLysG :    488
                     5321 bp           {||}|||||||||||||||||||||||||
          ++                         ++{al}GlyAlaValProValLeuSerLysG
 171258 : gt.........................ag{TT}GGAGCAGTGCCAGTCCTTTCCAAAG : 176605

    489 : luCysAlaSerGlyGluArgGlyArgArgMetSerGlnMetLysThrProHisAsnPr :    507
          |||||||||||||||||||||||||||||:!!||||||:!!|||||||||||||||||
          luCysAlaSerGlyGluArgGlyArgArgValSerGlnValLysThrProHisAsnPr
 176606 : AATGTGCGTCAGGGGAGAGAGGTCGCCGTGTGAGTCAAGTGAAGACCCCGCACAATCC : 176662

    508 : oLeuAspSerSerAlaProLeuMetLysLysGlyLysGlnArgGluIleProLysAla :    526
          ||||||||||||||||||||||!!:|||||||||||||||||||||||||||||||||
          oLeuAspSerSerAlaProLeuIleLysLysGlyLysGlnArgGluIleProLysAla
 176663 : CCTGGACTCCAGCGCCCCCCTGATAAAGAAAGGGAAGCAGAGGGAGATCCCCAAGGCC : 176719

    527 : LysLysProThrSerLeuLysLys  >>>> Target Intron 4 >>>>  IleIl :    536
          ||||||||||||||||||||||||           1034 bp           |||||
          LysLysProThrSerLeuLysLys++                         ++IleIl
 176720 : AAGAAGCCAACCTCACTGAAGAAGgt.........................agATTAT : 177783

    537 : eLeuLysGluArgGlnGluArgLys<->GlnArgLeuGlnGluAsnAlaValSerPro :    554
          |||||||||||||||||||||||||   |||||||||||||||||||||:!!||||||
          eLeuLysGluArgGlnGluArgLysGlnGlnArgLeuGlnGluAsnAlaIleSerPro
 177784 : TTTGAAAGAACGGCAAGAGAGAAAGCAGCAGCGTCTCCAAGAAAATGCTATAAGTCCA : 177840

    555 : AlaPheThrSerAspAspThrGlnAspGlyGluSerGlyGlyAspAspGlnPheProG :    574
          !.!|||.!!|||||||||||||||||||||||||||||||||||||||||| !!||||
          ValPheAlaSerAspAspThrGlnAspGlyGluSerGlyGlyAspAspGlnValProG
 177841 : GTTTTTGCCAGTGATGACACACAAGATGGAGAGAGTGGTGGTGACGACCAGGTTCCAG : 177900

    575 : luGlnAlaGluLeuSer{G}  >>>> Target Intron 5 >>>>  {ly}ProGl :    582
          |||||||||||  !|||{|}           1552 bp           {||}|||||
          luGlnAlaGluAlaSer{G}++                         ++{ly}ProGl
 177901 : AGCAGGCTGAGGCCTCA{G}gt.........................ag{GG}CCAGA : 179476

    583 : uGlyMetAspGluLeuIleSerThrProSerValGluAspLysSerGluGluProPro :    601
          |||||||||||||! !||||||||||||:!!||||||! !||||||||||||||||||
          uGlyMetAspGluProIleSerThrProAlaValGluGlyLysSerGluGluProPro
 179477 : GGGGATGGACGAACCGATCTCCACTCCTGCGGTTGAGGGCAAGTCAGAGGAGCCACCA : 179533

    602 : GlyThrGluLeuGlnArgAspThrGluAlaSerHisLeuAlaProAsnHisThrThrP :    621
          |||||||||||||||||||||||||||||||||||||||||||||  !|||..!||||
          GlyThrGluLeuGlnArgAspThrGluAlaSerHisLeuAlaProCysHisValThrP
 179534 : GGCACAGAACTCCAGAGGGACACAGAAGCCTCCCACCTTGCTCCCTGTCATGTCACCT : 179593

    622 : heProLysIleHisSerArgArgPheArg{As}  >>>> Target Intron 6 >> :    631
          |||||||||||||||||||||||||||||{||}            707 bp       
          heProLysIleHisSerArgArgPheArg{As}++                       
 179594 : TCCCTAAGATCCACAGCCGCAGATTCAGG{GA}gt....................... : 179627

    632 : >>  {p}TyrCysSerGlnMetLeuSerLysGluValAspAlaCysValThrAspLeu :    648
              {|}||||||||||||||||||!!!||||||||||||||||||||||||||||||
            ++{p}TyrCysSerGlnMetLeuCysLysGluValAspAlaCysValThrAspLeu
 179628 : ..ag{T}TACTGCAGCCAGATGCTTTGTAAAGAAGTGGATGCTTGTGTTACCGACCTA : 180381

    649 : LeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAspProValLysAlaL :    668
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
          LeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAspProValLysAlaA
 180382 : CTCAAAGAACTGGTCCGTTTCCAAGACCGTATGTACCAGAAAGATCCAGTCAAGGCCA : 180441

    669 : ysThrLysArgArgLeuValLeuGlyLeuArgGluValLeuLysHisLeuLysLeuLy :    687
          :!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgThrLysArgArgLeuValLeuGlyLeuArgGluValLeuLysHisLeuLysLeuLy
 180442 : GGACTAAACGTCGACTCGTGTTGGGGTTAAGGGAAGTTCTCAAACACCTGAAGCTCAA : 180498

    688 : sLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys{G}  > :    705
          ||||||||||||||||||||||||||||||||||||||||||||||||||||{|}   
          sLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys{G}++ 
 180499 : AAAACTGAAATGTGTCATTATTTCTCCCAATTGTGAGAAGATACAGTCGAAA{G}gt. : 180555

    706 : >>> Target Intron 7 >>>>  {ly}GlyLeuAspAspThrLeuHisThrIleI :    715
                  7931 bp           {||}||||||||||||||||||||||||||||
                                  ++{ly}GlyLeuAspAspThrLeuHisThrIleI
 180556 : ........................ag{GT}GGGCTGGATGACACTTTGCACACAATTA : 188513

    716 : leAspTyrAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLysAlaLe :    734
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leAspTyrAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLysAlaLe
 188514 : TTGATTACGCCTGTGAACAGAACATTCCCTTTGTGTTTGCTCTCAACCGCAAAGCTCT : 188570

    735 : uGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTyrAsp :    753
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTyrAsp
 188571 : GGGGCGCAGTTTGAACAAGGCAGTTCCTGTCAGCGTGGTGGGGATCTTCAGCTACGAT : 188627

    754 : GlyAlaGln  >>>> Target Intron 8 >>>>  AspGlnPheHisLysMetVa :    763
          |||||||||            422 bp           ||||||||||||||||||||
          GlyAlaGln++                         ++AspGlnPheHisLysMetVa
 188628 : GGGGCCCAGgt.........................agGATCAATTCCACAAGATGGT : 189079

    764 : lGluLeuThrValAlaAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGln :    782
          ||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||
          lGluLeuThrMetAlaAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGln
 189080 : TGAGCTGACAATGGCAGCCCGACAGGCATACAAGACCATGCTGGAGAATGTGCAGCAG : 189136

    783 : GluLeuValGlyGluProArgProGlnAlaProProSerLeuProThrGlnGlyProS :    802
          ||||||!.!||||||||||||||||||||||||||||||! !|||||||||! !||||
          GluLeuAlaGlyGluProArgProGlnAlaProProSerProProThrGlnAspProS
 189137 : GAGCTGGCGGGAGAGCCCAGGCCTCAGGCACCTCCCAGCCCGCCCACACAGGACCCCA : 189196

    803 : erCysProAlaGluAspGlyProProAlaLeuLysGluLysGluGluProHisTyr{I :    821
          ||||||||.!!|||||||||||||||||||||! !|||||||||||||||||||||{|
          erCysProThrGluAspGlyProProAlaLeuThrGluLysGluGluProHisTyr{I
 189197 : GCTGCCCTACAGAAGACGGCCCCCCAGCCCTGACAGAAAAAGAAGAGCCACACTAC{A : 189253

    822 : }  >>>> Target Intron 9 >>>>  {le}GluIleTrpLysLysHisLeuGlu :    829
          }            575 bp           {||}||||||||||||||||||||||||
          }++                         ++{le}GluIleTrpLysLysHisLeuGlu
 189254 : }gt.........................ag{TT}GAAATCTGGAAAAAACATCTGGAA : 189852

    830 : AlaTyrSerGlyCysThrLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnM :    849
          ||||||||| !!|||.!!||||||||||||||||||||||||||||||||||||||||
          AlaTyrSerArgCysAlaLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnM
 189853 : GCATACAGTCGATGTGCCCTGGAGCTAGAAGAATCCCTGGAGGCTTCAACCTCTCAAA : 189912

    850 : etMetAsnLeuAsnLeu :    854
          ||||||||:!!||||||
          etMetAsnMetAsnLeu
 189913 : TGATGAATATGAATTTA : 189929

vulgar: SPP00000037_1.0 363 854 . gi|357434160|gb|JH378203.1|:subseq(4625130,339258) 168168 189929 + 2241 M 41 123 5 0 2 I 0 1323 3 0 2 M 30 90 5 0 2 I 0 1412 3 0 2 M 44 132 S 0 1 5 0 2 I 0 5317 3 0 2 S 1 2 M 55 165 5 0 2 I 0 1030 3 0 2 M 10 30 G 0 3 M 35 105 S 0 1 5 0 2 I 0 1548 3 0 2 S 1 2 M 50 150 S 0 2 5 0 2 I 0 703 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 7927 3 0 2 S 1 2 M 51 153 5 0 2 I 0 418 3 0 2 M 64 192 S 0 1 5 0 2 I 0 571 3 0 2 S 1 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	gene	168169	189929	2241	+	.	gene_id 1 ; sequence SPP00000037_1.0 ; gene_orientation +
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	168169	168291	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	168169	168291	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	168292	168293	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	168292	169618	.	+	.	intron_id 1
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	169617	169618	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	169619	169708	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	169619	169708	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	169709	169710	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	169709	171124	.	+	.	intron_id 2
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	171123	171124	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	171125	171257	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	171125	171257	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	171258	171259	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	171258	176578	.	+	.	intron_id 3
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	176577	176578	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	176579	176745	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	176579	176745	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	176746	176747	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	176746	177779	.	+	.	intron_id 4
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	177778	177779	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	177780	177918	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	177780	177918	.	+	.	insertions 3 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	177919	177920	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	177919	179470	.	+	.	intron_id 5
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	179469	179470	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	179471	179624	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	179471	179624	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	179625	179626	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	179625	180331	.	+	.	intron_id 6
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	180330	180331	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	180332	180552	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	180332	180552	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	180553	180554	.	+	.	intron_id 7 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	180553	188483	.	+	.	intron_id 7
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	188482	188483	.	+	.	intron_id 6 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	188484	188638	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	188484	188638	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	188639	188640	.	+	.	intron_id 8 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	188639	189060	.	+	.	intron_id 8
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	189059	189060	.	+	.	intron_id 7 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	189061	189253	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	189061	189253	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	189254	189255	.	+	.	intron_id 9 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	189254	189828	.	+	.	intron_id 9
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	189827	189828	.	+	.	intron_id 8 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	189829	189929	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	189829	189929	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	similarity	168169	189929	2241	+	.	alignment_id 1 ; Query SPP00000037_1.0 ; Align 168169 364 123 ; Align 169619 405 90 ; Align 171125 435 132 ; Align 176581 480 165 ; Align 177780 535 30 ; Align 177813 545 105 ; Align 179473 581 150 ; Align 180333 632 219 ; Align 188486 706 153 ; Align 189061 757 192 ; Align 189831 822 99
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete
        Target: gi|357434160|gb|JH378203.1|:subseq(4625130,339258) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00099, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 907
   Query range: 0 -> 203
  Target range: 148872 -> 232660

      1 : MetAlaSerGluGlyProArgGluProGluSerGlu  >>>> Target Intron 1 :     13
          |||||||||||||||! !||||||||||||||||||           1094 bp    
          MetAlaSerGluGlyLeuArgGluProGluSerGlu++                    
 148873 : ATGGCGTCGGAGGGGCTGCGGGAGCCCGAAAGCGAGgt.................... : 148911

     14 :  >>>>  GlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGly :     29
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
               ++GlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGly
 148912 : .....agGGCATCAAGTTATCAGCAGATGTCAAACCGTTTGTCCCCAGATTTGCCGGG : 150051

     30 : LeuAsnValAlaTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaT :     49
          ||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
          LeuAsnValAlaTrpLeuGluSerSerGluAlaArgValPheProSerSerAlaAlaT
 150052 : CTCAATGTGGCATGGTTAGAGTCCTCAGAAGCACGTGTCTTCCCCAGCTCTGCAGCCA : 150111

     50 : hrTyrTyrProPheValGlnGluProProValThr{Gl}  >>>> Target Intro :     61
          |||||||||||||||||||||||||||||||||||{||}           5544 bp 
          hrTyrTyrProPheValGlnGluProProValThr{Gl}++                 
 150112 : CGTACTATCCGTTTGTTCAGGAACCACCAGTGACC{GA}gt................. : 150151

     62 : n 2 >>>>  {u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPhe :     76
                    {|}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPhe
 150152 : ........ag{G}CAGAAAATATACACTGAAGACATGGCCTTTGGAGCTTCAACTTTT : 155736

     77 : ProProGlnTyrLeuSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrT :     96
          ||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
          ProProGlnTyrIleSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrT
 155737 : CCACCTCAGTATATATCTTCTGAGATAACTCTTCATCCATATGCCTATTCTCCTTATA : 155796

     97 : hrLeuAspSerThrGlnAsnValTyrSerValProGlySerGlnTyrLeuTyrAsnGl :    115
          |||||||||||||||||!:!|||||||||||||||||||||!!.! !! !!:!|||!!
          hrLeuAspSerThrGlnSerValTyrSerValProGlySerHisCysHisPheAsnHi
 155797 : CCCTTGACTCTACACAGAGTGTTTACTCAGTGCCTGGCTCCCACTGTCACTTTAACCA : 155853

    116 : nProSerCysTyrArgGlyPheGlnThrValLysHisArgAsnGluAsnThrCysPro :    134
          .|||||||||||||||||||||||||||!.!|||||| !!||||||!:!! !||||||
          sProSerCysTyrArgGlyPheGlnThrAlaLysHisGlyAsnGluSerMetCysPro
 155854 : TCCCAGTTGTTACCGAGGTTTTCAGACCGCGAAGCATGGAAATGAGAGCATGTGCCCT : 155910

    135 : LeuProGlnGluMetLysAlaLeuPheLys  >>>> Target Intron 3 >>>>  :    145
          ! !|||||||||||||||||||||||||||            249 bp          
          ProProGlnGluMetLysAlaLeuPheLys++                         +
 155911 : CCACCGCAGGAAATGAAAGCTCTGTTTAAGgt.........................a : 156190

    146 :  LysLysThrTyrAspGluLysLysThrTyrAspGlnGlnLysPheAspSerGluArg :    163
           |||||||||||||||||||||||||||||||||:!!|||||||||||||||:!!|||
          +LysLysThrTyrAspGluLysLysThrTyrAspGluGlnLysPheAspSerLysArg
 156191 : gAAAAAAACCTACGATGAGAAAAAAACATATGATGAGCAAAAGTTTGACAGTAAAAGG : 156246

    164 : AlaAspGlyThrIleSerSerGluIleLysSerAlaArgGlySerHisHisLeuSerI :    183
          ||||||||||||! !|||||||||||||||||||||||||||||||||||||||||||
          AlaAspGlyThrThrSerSerGluIleLysSerAlaArgGlySerHisHisLeuSerI
 156247 : GCTGATGGAACTACATCATCTGAGATAAAGTCAGCTAGAGGTTCACATCATTTGTCCA : 156306

    184 : leTyrAlaGluAsnSerLeuLysSer{A}  >>>> Target Intron 4 >>>>   :    192
          ||||||||||||||!!!|||||||||{|}           76292 bp          
          leTyrAlaGluAsnThrLeuLysSer{A}++                         -+
 156307 : TTTATGCTGAGAATACTTTGAAATCA{G}gt.........................tg : 232624

    193 : {sp}GlyTyrHisLysArgThrAspArgLysSerArg :    203
          {||}  !  !|||||||||||||||!:!!:!!:!!:!
          {sp}HisArgHisLysArgThrAspGlnArgAsnLys
 232625 : {AC}CACCGCCACAAACGTACAGACCAGAGAAACAAG : 232660

vulgar: SPP00000037_1.0 0 203 . gi|357434160|gb|JH378203.1|:subseq(4625130,339258) 148872 232660 + 907 M 12 36 5 0 2 I 0 1090 3 0 2 M 48 144 S 0 2 5 0 2 I 0 5540 3 0 2 S 1 1 M 83 249 5 0 2 I 0 245 3 0 2 M 47 141 S 0 1 5 0 2 I 0 76288 3 0 2 S 1 2 M 11 33
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	gene	148873	232660	907	+	.	gene_id 2 ; sequence SPP00000037_1.0 ; gene_orientation +
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	148873	148908	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	148873	148908	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	148909	148910	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	148909	150002	.	+	.	intron_id 1
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	150001	150002	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	150003	150148	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	150003	150148	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	150149	150150	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	150149	155692	.	+	.	intron_id 2
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	155691	155692	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	155693	155942	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	155693	155942	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	155943	155944	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	155943	156191	.	+	.	intron_id 3
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	156190	156191	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	156192	156333	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	156192	156333	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice5	156334	156335	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	intron	156334	232625	.	+	.	intron_id 4
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	splice3	232624	232625	.	+	.	intron_id 3 ; splice_site "TG"
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	cds	232626	232660	.	+	.	
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	exon	232626	232660	.	+	.	insertions 0 ; deletions 0
gi|357434160|gb|JH378203.1|:subseq(4625130,339258)	exonerate:protein2genome:local	similarity	148873	232660	907	+	.	alignment_id 2 ; Query SPP00000037_1.0 ; Align 148873 1 36 ; Align 150003 13 144 ; Align 155694 62 249 ; Align 156192 145 141 ; Align 232628 193 33
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis