TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP03 SPCS_HUMAN RecName: Full=O-phosphoseryl-tRNA(Sec)
selenium transferase; AltName: Full=Liver-pancreas antigen; Short=LP;
AltName: Full=SLA-p35; AltName: Full=SLA/LP autoantigen; AltName:
Full=Selenocysteine synthase; Short=Sec synthase; AltName:
Full=Selenocysteinyl-tRNA(Sec) synthase; AltName:
Full=Sep-tRNA:Sec-tRNA synthase; Short=SepSecS; AltName: Full=Soluble
liver antigen; Short=SLA; AltName: Full=UGA suppressor tRNA-associated
protein; AltName: Full=tRNA(Ser/Sec)-associated antigenic protein
         (501 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378128.1| Saimiri boliviensis boliviensis unplaced genomic ...   188   7e-46

>gb|JH378128.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00024,
                whole genome shotgun sequence
          Length = 25516302

 Score =  188 bits (477), Expect = 7e-46
 Identities = 92/102 (90%), Positives = 96/102 (94%)
 Frame = -1

Query: 400      VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLK 459
                +S  RVVPLGS+QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLD CLK
Sbjct: 11315703 LSSFRVVPLGSLQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDSCLK 11315524

Query: 460      AVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 501
                 +RKE+SKESDDNYDKTEDVDIEEMALKLDN LLDT QDASS
Sbjct: 11315523 TIRKEQSKESDDNYDKTEDVDIEEMALKLDNALLDTQQDASS 11315398



 Score =  117 bits (294), Expect = 1e-24
 Identities = 55/59 (93%), Positives = 56/59 (94%)
 Frame = -1

Query: 130      GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVV 188
                GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG   V+
Sbjct: 11347092 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGKRSVI 11346916



 Score =  117 bits (293), Expect = 2e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%), Gaps = 2/64 (3%)
 Frame = -3

Query: 36       LEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR--FIH 93
                L KGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR  F++
Sbjct: 11349334 LFKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRYLFLN 11349155

Query: 94       GIGR 97
                  GR
Sbjct: 11349154 STGR 11349143



 Score =  102 bits (254), Expect = 5e-20
 Identities = 49/52 (94%), Positives = 51/52 (98%)
 Frame = -2

Query: 183      GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR 234
                GFEPVVIENVLEGDELRTDL+AV+AKVQELGPD ILCIHSTTSCFAPRVPDR
Sbjct: 11346047 GFEPVVIENVLEGDELRTDLQAVKAKVQELGPDNILCIHSTTSCFAPRVPDR 11345892



 Score = 91.7 bits (226), Expect(2) = 1e-29
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = -2

Query: 269      GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGR 313
                GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG+
Sbjct: 11336162 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGK 11336028



 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 41/43 (95%), Positives = 43/43 (100%)
 Frame = -3

Query: 90       RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVH 132
                RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG++
Sbjct: 11347525 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGMY 11347397



 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 1        MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK 38
                MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
Sbjct: 11350588 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK 11350475



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = -2

Query: 234      RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ 268
                RLEELAVICAN+ IPHIVNNAYGVQSSKCMHLIQQ
Sbjct: 11342972 RLEELAVICANFGIPHIVNNAYGVQSSKCMHLIQQ 11342868



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 41/76 (53%), Positives = 49/76 (64%)
 Frame = -1

Query: 342      KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVS 401
                +EMFSYLSNQIKKLSEAYNERLLHTPHNPISL          ++K V Q         +S
Sbjct: 11318847 QEMFSYLSNQIKKLSEAYNERLLHTPHNPISLG----NFFFPKEKQVLQ--------SIS 11318704

Query: 402      GARVVPLGSMQTVSGY 417
                  +++ L S +T SGY
Sbjct: 11318703 RKKLLFLESERTPSGY 11318656



 Score = 63.5 bits (153), Expect(2) = 1e-29
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = -3

Query: 306      ISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSY 347
                +S +  GRASASPSLDVLITLLSLGSNGY+KLLKERK  F +
Sbjct: 11335918 LSLLISGRASASPSLDVLITLLSLGSNGYQKLLKERKVSFPF 11335793



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = -3

Query: 374      AMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPL 408
                A+TLKTLD+H DKAVTQLGSMLFTRQVSGAR V L
Sbjct: 11317285 AVTLKTLDKHHDKAVTQLGSMLFTRQVSGARYVCL 11317181


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,457,360,363
Number of Sequences: 2685
Number of extensions: 22061562
Number of successful extensions: 81340
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 76093
Number of HSP's gapped (non-prelim): 21117
length of query: 501
length of database: 869,524,021
effective HSP length: 135
effective length of query: 366
effective length of database: 869,161,546
effective search space: 318113125836
effective search space used: 318113125836
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)