TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP01 L-seryl-tRNA(Sec) kinase [Homo sapiens]
         (348 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378110.1| Saimiri boliviensis boliviensis unplaced genomic ...   196   1e-48

>gb|JH378110.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00006,
                whole genome shotgun sequence
          Length = 49021937

 Score =  196 bits (499), Expect = 1e-48
 Identities = 95/102 (93%), Positives = 97/102 (95%)
 Frame = -3

Query: 73       PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQ 132
                PSQWKLLRQELLKYLEYFLMAVINGCQMS PPNRTEAMWEDFITCLKDQDLI +AAFEAQ
Sbjct: 10075968 PSQWKLLRQELLKYLEYFLMAVINGCQMSAPPNRTEAMWEDFITCLKDQDLILNAAFEAQ 10075789

Query: 133      SCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGF 174
                SCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK +  F
Sbjct: 10075788 SCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKCN*NF 10075663



 Score =  138 bits (347), Expect = 5e-31
 Identities = 67/74 (90%), Positives = 69/74 (93%)
 Frame = -3

Query: 1        MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP 60
                MKTAEN RGTGSDGP KRGLCVLCGLPAAGKSTFARALAHRL+QEQGWA+GVVAYDDVMP
Sbjct: 10078560 MKTAENSRGTGSDGPLKRGLCVLCGLPAAGKSTFARALAHRLRQEQGWAVGVVAYDDVMP 10078381

Query: 61       DAFLAGARARPAPS 74
                DAFLAGA A PA S
Sbjct: 10078380 DAFLAGASALPAVS 10078339



 Score =  127 bits (318), Expect = 1e-27
 Identities = 58/65 (89%), Positives = 60/65 (92%)
 Frame = -3

Query: 171      SLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPA 230
                SLGFCQLFLDCPLETCLQRNGQRP+ALP ETI LMGRKLEKPNPEKNAWEHNSLT+ SP 
Sbjct: 10075437 SLGFCQLFLDCPLETCLQRNGQRPRALPAETIRLMGRKLEKPNPEKNAWEHNSLTLQSPV 10075258

Query: 231      CASEA 235
                CAS A
Sbjct: 10075257 CASGA 10075243



 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 39/58 (67%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
 Frame = -1

Query: 292      KGNQEAFSEMTFKQRWVR---ANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLS 346
                KGNQE FSEMTFKQR  R    N   IWR ILGNEHIKCRS + G L+C RI +RPLS
Sbjct: 10071731 KGNQEGFSEMTFKQRCKRRERTNRPGIWRTILGNEHIKCRSPEAGCLECYRIRERPLS 10071558



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/32 (90%), Positives = 29/32 (90%)
 Frame = -2

Query: 262      DTDRIICSTNILHKTDQTLRRIVSQTMKEAKG 293
                DTDRIICSTNILH  D TLRRIVSQTMKEAKG
Sbjct: 10072186 DTDRIICSTNILHTADVTLRRIVSQTMKEAKG 10072091



 Score = 52.8 bits (125), Expect = 3e-05
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = -1

Query: 236      SLEVTDLLLTALENPVKYAEDNMEQK 261
                SLEVTDLLLTALENPVKYAEDN+EQK
Sbjct: 10072757 SLEVTDLLLTALENPVKYAEDNLEQK 10072680


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,245,486,045
Number of Sequences: 2685
Number of extensions: 20924001
Number of successful extensions: 86556
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 71421
Number of HSP's gapped (non-prelim): 43914
length of query: 348
length of database: 869,524,021
effective HSP length: 131
effective length of query: 217
effective length of database: 869,172,286
effective search space: 188610386062
effective search space used: 188610386062
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)