TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378203.1| Saimiri boliviensis boliviensis unplaced genomic ...   151   1e-34
gb|JH378121.1| Saimiri boliviensis boliviensis unplaced genomic ...   110   3e-22
gb|JH378136.1| Saimiri boliviensis boliviensis unplaced genomic ...   104   2e-20
gb|JH378140.1| Saimiri boliviensis boliviensis unplaced genomic ...    80   7e-13

>gb|JH378203.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00099,
               whole genome shotgun sequence
          Length = 8192610

 Score =  151 bits (382), Expect = 1e-34
 Identities = 70/82 (85%), Positives = 74/82 (90%)
 Frame = +3

Query: 62      QKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYRG 121
               QKIYTEDMAFGASTFPPQY+SSEITLHPYAYSPYTLDSTQ+VYSVPGS   +N PSCYRG
Sbjct: 4780824 QKIYTEDMAFGASTFPPQYISSEITLHPYAYSPYTLDSTQSVYSVPGSHCHFNHPSCYRG 4781003

Query: 122     FQTVKHRNENTCPLPQEMKALF 143
               FQT KH NE+ CP PQEMKALF
Sbjct: 4781004 FQTAKHGNESMCPPPQEMKALF 4781069



 Score =  126 bits (317), Expect = 5e-27
 Identities = 59/67 (88%), Positives = 61/67 (91%)
 Frame = +1

Query: 756     QDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEK 815
               +DQFHKMVELT+AARQAYKTMLENVQQEL GEPRPQAPPS PTQ PSCP EDGPPAL EK
Sbjct: 4814188 KDQFHKMVELTMAARQAYKTMLENVQQELAGEPRPQAPPSPPTQDPSCPTEDGPPALTEK 4814367

Query: 816     EEPHYIE 822
               EEPHY E
Sbjct: 4814368 EEPHYSE 4814388



 Score =  124 bits (311), Expect = 2e-26
 Identities = 62/74 (83%), Positives = 63/74 (85%)
 Frame = +3

Query: 632     YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXC 691
               YCSQML KEVDACVTDLLKELVRFQDRMYQKDPVKA+TKRRLVLGLREV          C
Sbjct: 4805463 YCSQMLCKEVDACVTDLLKELVRFQDRMYQKDPVKARTKRRLVLGLREVLKHLKLKKLKC 4805642

Query: 692     VIISPNCEKIQSKG 705
               VIISPNCEKIQSKG
Sbjct: 4805643 VIISPNCEKIQSKG 4805684



 Score =  107 bits (268), Expect = 2e-21
 Identities = 52/52 (100%), Positives = 52/52 (100%)
 Frame = +2

Query: 705     GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756
               GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ
Sbjct: 4813613 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 4813768



 Score =  100 bits (248), Expect = 5e-19
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = +3

Query: 12      EGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTE 61
               +GIKLSADVKPFVPRFAGLNVAWLESSEA VFPSSAATYYPFVQEPPVTE
Sbjct: 4775130 QGIKLSADVKPFVPRFAGLNVAWLESSEARVFPSSAATYYPFVQEPPVTE 4775279



 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 48/58 (82%), Positives = 50/58 (86%)
 Frame = +1

Query: 580     GPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQML 637
               GPEGMDE ISTP+VE KSEEPPGTELQRDTEASHLAP H TFPKIHSRRFR+  S  L
Sbjct: 4804600 GPEGMDEPISTPAVEGKSEEPPGTELQRDTEASHLAPCHVTFPKIHSRRFRE*VSPCL 4804773



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 44/48 (91%), Positives = 48/48 (100%)
 Frame = +1

Query: 488     ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI 535
               ECASGERGRR+SQ+KTPHNPLDSSAPL+KKGKQREIPKAKKPTSLKK+
Sbjct: 4801735 ECASGERGRRVSQVKTPHNPLDSSAPLIKKGKQREIPKAKKPTSLKKV 4801878



 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 42/48 (87%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 534     KIILKERQERKQ-RLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSG 580
               KIILKERQERKQ RLQENA+SP F SDDTQDGESGGDDQ PEQAE SG
Sbjct: 4802907 KIILKERQERKQQRLQENAISPVFASDDTQDGESGGDDQVPEQAEASG 4803050



 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = +2

Query: 434     QDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQ 470
               Q N KNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQ
Sbjct: 4796252 QVNLKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQ 4796362



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 32/36 (88%), Positives = 35/36 (97%)
 Frame = +3

Query: 156     QQKFDSERADGTISSEIKSARGSHHLSIYAENSLKS 191
               +QKFDS+RADGT SSEIKSARGSHHLSIYAEN+LKS
Sbjct: 4781355 EQKFDSKRADGTTSSEIKSARGSHHLSIYAENTLKS 4781462



 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = +2

Query: 405     DAEEFPNLAVASERRDRIETPKFQSKQQPQDNFK 438
               DAEEFPNLAVASERRDRIE PKFQSKQQPQ  F+
Sbjct: 4794749 DAEEFPNLAVASERRDRIERPKFQSKQQPQVIFR 4794850



 Score = 50.8 bits (120), Expect = 3e-04
 Identities = 27/41 (65%), Positives = 27/41 (65%)
 Frame = +1

Query: 364     SKASQGSDLEQNEAXXXXXXXXXXXXXXYEVLTVQEPPRIE 404
               SKASQGSDLEQNEA              YEVLTVQEPPRIE
Sbjct: 4793299 SKASQGSDLEQNEASRKNKKKKEKSASKYEVLTVQEPPRIE 4793421


>gb|JH378121.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00017,
                whole genome shotgun sequence
          Length = 31320352

 Score =  110 bits (276), Expect = 3e-22
 Identities = 64/121 (52%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = +2

Query: 81       LSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEMK 140
                +S  ITLH  AYSP+TL   +++ +   SQY YNQPSCY+GFQ  K   E+ C  PQE K
Sbjct: 11616383 ISEFITLHL*AYSPFTLTLRESLLNTC-SQYNYNQPSCYQGFQIAKP*KESMCGFPQETK 11616559

Query: 141      ALFXXXXXXXXXXXXQQKFDSERADGTISSEIKSARGSHHLSIYAENSLKSDG-YHKRTD 199
                               +QKFD +RADGTISSE KSA+ SHH SI+AENSLKSDG Y+++ D
Sbjct: 11616560 L----NDNEKHKKCDEQKFDGKRADGTISSETKSAKHSHH*SIHAENSLKSDG*YYEQID 11616727

Query: 200      R 200
                R
Sbjct: 11616728 R 11616730



 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
 Frame = +3

Query: 4        EGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTEQK 63
                +GP E E   I LS DVK FVPRF+G +VA  ESSEA  F   AAT+Y FV EP VTEQK
Sbjct: 11616162 KGPCELED*VIMLSVDVKLFVPRFSGPSVA*SESSEARAFHRCAATHYLFVLEP*VTEQK 11616341

Query: 64       IYTEDMAFGASTFPPQ----YLSSEITLHPYAY-SPYTLDSTQNVYSVPGSQYLYNQPSC 118
                 Y+E+ A GASTFP Q    ++   I L P  Y   +++ +   + + P    ++   S 
Sbjct: 11616342 TYSENKALGASTFPSQNL*LFICKPILLLP*LYVKVFSIHAPSIIITNPVVTKVFK*QSP 11616521

Query: 119      YRGFQTVKHRNENT 132
                 R    V H+ +N+
Sbjct: 11616522 KRSPCVVFHKKQNS 11616563



 Score = 69.3 bits (168), Expect = 9e-10
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
 Frame = +3

Query: 236      IQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTREL 295
                I +QPK    +S  T+I LLRE+VK A + S+G+IVVKN            NS  C +  
Sbjct: 11617104 ICQQPKRESGYSTWTNICLLREMVKSADMFSEGKIVVKNK**-------ICNS*CCYQ-- 11617256

Query: 296      SWTPMGYVVRQTLSTELSAAPKNVT--------------SMINLKTIASSADPKNVSIPS 341
                    + ++ ++ L  +      ++T               M   + I SSA+PK VS   
Sbjct: 11617257 ----LPFLYKRYLGHQWQCCLADITYSTVSNPYLYFHAKPMTL*RRIPSSAEPKGVSA*L 11617424

Query: 342      SEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEA 377
                 E LS DPSYN EK II   + S+AS   DLEQNEA
Sbjct: 11617425 FEVLSPDPSYNNEKDIICHVKTSEASHAGDLEQNEA 11617532



 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 37/98 (37%), Positives = 53/98 (54%)
 Frame = +2

Query: 426      KFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQXXXXXXXXXXXXXXX 485
                KF+SKQQP++ F N  KKSQ+PV L LG +L AL+K+QHSQ + Q               
Sbjct: 11617736 KFKSKQQPRNTFLNGFKKSQIPVWLGLGKILRALKKQQHSQPSMQTSSVLSGSQ------ 11617897

Query: 486      XXECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREI 523
                    A   +G  + Q++  H PL  S P ++ G +R +
Sbjct: 11617898 ----AGPLQGSCVGQVRLWHKPLHGSTP*VRNGNRRRL 11617999


>gb|JH378136.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00032,
               whole genome shotgun sequence
          Length = 21366645

 Score =  104 bits (260), Expect = 2e-20
 Identities = 50/74 (67%), Positives = 59/74 (79%)
 Frame = +1

Query: 632     YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXC 691
               YC+Q+L KE+D CVT LL+ELV FQ+R+YQKDPV+AK +RRLV+GLREV          C
Sbjct: 8783209 YCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKC 8783388

Query: 692     VIISPNCEKIQSKG 705
               VIISPNCEKIQSKG
Sbjct: 8783389 VIISPNCEKIQSKG 8783430



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +3

Query: 705     GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVE 764
               GGLD+ L+ +I  A EQ IPFVFAL RKALGR +NK VPVSVVGIF+Y GA+ +  K + 
Sbjct: 8784318 GGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAEVRI*KTLS 8784497

Query: 765     LTVA 768
                + A
Sbjct: 8784498 CSPA 8784509


>gb|JH378140.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00036,
                whole genome shotgun sequence
          Length = 19594188

 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 44/76 (57%), Positives = 50/76 (65%)
 Frame = -1

Query: 296      SWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEK 355
                S+TP  Y V           PKN T M NLK +ASSA+PKN S  SSE  S DPSYNKEK
Sbjct: 14767614 SYTPTSYTV-----------PKNGTFMTNLKMVASSANPKNFSGSSSEV*SLDPSYNKEK 14767468

Query: 356      HIIHPTQKSKASQGSD 371
                HIIHP ++ +ASQGSD
Sbjct: 14767467 HIIHPPKQPQASQGSD 14767420


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,202,080,959
Number of Sequences: 2685
Number of extensions: 29977038
Number of successful extensions: 135606
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 110474
Number of HSP's gapped (non-prelim): 70158
length of query: 854
length of database: 869,524,021
effective HSP length: 140
effective length of query: 714
effective length of database: 869,148,121
effective search space: 620571758394
effective search space used: 620571758394
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)