BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000012_1.0 # SECIS # Selenoprotein K (SelK) # Homo sapiens
# Complete # Reverse
         (103 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...   172   2e-41
gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic ...   172   2e-41
gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic ...   159   3e-37
gb|JH378142.1| Saimiri boliviensis boliviensis unplaced genomic ...   149   3e-34
gb|JH378192.1| Saimiri boliviensis boliviensis unplaced genomic ...   139   3e-31
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...   127   1e-27
gb|JH378107.1| Saimiri boliviensis boliviensis unplaced genomic ...   125   4e-27
gb|JH378208.1| Saimiri boliviensis boliviensis unplaced genomic ...   121   6e-26
gb|JH378169.1| Saimiri boliviensis boliviensis unplaced genomic ...   115   4e-24
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    74   1e-11

>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score =  172 bits (87), Expect = 2e-41
 Identities = 99/103 (96%)
 Strand = Plus / Minus

                                                                           
Query: 1       aacatctgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattccc 60
               ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 4449238 aacatgtgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattcct 4449179

                                                          
Query: 61      agcatgacctcattcatctgtgaggacacagagcagtccttgt 103
                ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4449178 ggcatgacctcattcatctgtgaggacacagaacagtccttgt 4449136


>gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00056,
                whole genome shotgun sequence
          Length = 15574059

 Score =  172 bits (87), Expect = 2e-41
 Identities = 99/103 (96%)
 Strand = Plus / Minus

                                                                            
Query: 1        aacatctgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattccc 60
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 11096478 aacatgtgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattcct 11096419

                                                           
Query: 61       agcatgacctcattcatctgtgaggacacagagcagtccttgt 103
                 ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11096418 ggcatgacctcattcatctgtgaggacacagaacagtccttgt 11096376


>gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00050,
                whole genome shotgun sequence
          Length = 16452072

 Score =  159 bits (80), Expect = 3e-37
 Identities = 96/100 (96%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatctgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattccca 61
                |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11256592 acatgtgcatttatggaactgcatgtcagtcag-ccagttccctgcagagggaattccca 11256650

                                                        
Query: 62       gcatgacctcattcatctgtgaggacacagagcagtcctt 101
                |||||||||||||||| |||||||||||||||| ||||||
Sbjct: 11256651 gcatgacctcattcatttgtgaggacacagagcggtcctt 11256690


>gb|JH378142.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00038,
                whole genome shotgun sequence
          Length = 19171412

 Score =  149 bits (75), Expect = 3e-34
 Identities = 90/95 (94%)
 Strand = Plus / Minus

                                                                            
Query: 7        tgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatg 66
                |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||
Sbjct: 18512566 tgcatttatggaactgcatgccagttaggccagttcccggtagagggaattcccagcatg 18512507

                                                   
Query: 67       acctcattcatctgtgaggacacagagcagtcctt 101
                | |||||||||||||||||||||||||||||||||
Sbjct: 18512506 agctcattcatctgtgaggacacagagcagtcctt 18512472


>gb|JH378192.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00088,
               whole genome shotgun sequence
          Length = 9397244

 Score =  139 bits (70), Expect = 3e-31
 Identities = 82/86 (95%)
 Strand = Plus / Plus

                                                                           
Query: 13      tatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatgacctca 72
               |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct: 1804387 tatggaactgcaagtcagtcaggctagttccctgaagagggaattcccagcatgacttca 1804446

                                         
Query: 73      ttcatctgtgaggacacagagcagtc 98
               ||||||||||||||||||||||||||
Sbjct: 1804447 ttcatctgtgaggacacagagcagtc 1804472


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score =  127 bits (64), Expect = 1e-27
 Identities = 89/97 (91%), Gaps = 4/97 (4%)
 Strand = Plus / Plus

                                                                            
Query: 7        tgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatg 66
                ||||||||||||||| |||||||    ||||||||| |||||||||||||||||||||||
Sbjct: 14931926 tgcatttatggaactacatgtca----ggccagttctctgcagagggaattcccagcatg 14931981

                                                     
Query: 67       acctcattcatctgtgaggacacagagcagtccttgt 103
                ||||||||||||  |||||||||||||||||||||||
Sbjct: 14931982 acctcattcatcactgaggacacagagcagtccttgt 14932018


>gb|JH378107.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00003,
                whole genome shotgun sequence
          Length = 58292249

 Score =  125 bits (63), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 9        catttatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatgac 68
                ||||||||||||||||||||| |||| |||  |||||| ||||||||||||||||||| |
Sbjct: 39986402 catttatggaactgcatgtcactcagtccaactccctgtagagggaattcccagcatgcc 39986461

                                                   
Query: 69       ctcattcatctgtgaggacacagagcagtccttgt 103
                 |||||||||||||| |||||||||||||||||||
Sbjct: 39986462 ttcattcatctgtgaagacacagagcagtccttgt 39986496


>gb|JH378208.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00104,
               whole genome shotgun sequence
          Length = 7843285

 Score =  121 bits (61), Expect = 6e-26
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                           
Query: 7       tgcatttatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatg 66
               |||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 1593968 tgcaattatagaactgcataccagtcaggccagttccctgcagagggaattcccagcatg 1594027

                                                    
Query: 67      acctcattcatctgtgaggacacagagcagtccttgt 103
               | ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 1594028 atctcattcatctgtgaagacccagggcaatccttgt 1594064


>gb|JH378169.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00065,
               whole genome shotgun sequence
          Length = 12923763

 Score =  115 bits (58), Expect = 4e-24
 Identities = 77/82 (93%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                           
Query: 10      atttatggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatgacc 69
               ||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct: 5319837 atttatggaactgtatgtcagtcag-ccagtttcctgcagagggagttcccagcatgacc 5319779

                                     
Query: 70      tcattcatctgtgaggacacag 91
               |||| |||||||||||||||||
Sbjct: 5319778 tcatccatctgtgaggacacag 5319757


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
               whole genome shotgun sequence
          Length = 7396992

 Score = 73.8 bits (37), Expect = 1e-11
 Identities = 62/69 (89%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                           
Query: 16      ggaactgcatgtcagtcaggccagttccctgcagagggaattcccagcatgacctcattc 75
               |||||||| |||| || |||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct: 7094949 ggaactgcctgtcggttaggccagt-ccctgcaaagggaattcacagcatgacctcattc 7095007

                        
Query: 76      atctgtgag 84
               || ||||||
Sbjct: 7095008 atttgtgag 7095016


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,704
Number of Sequences: 2685
Number of extensions: 176704
Number of successful extensions: 92
Number of sequences better than 1.0e-03: 10
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 12
length of query: 103
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 84
effective length of database: 2,608,521,049
effective search space: 219115768116
effective search space used: 219115768116
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)