BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000006_1.0 # SECIS # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete # Forward
         (93 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic ...   127   9e-28

>gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062,
               whole genome shotgun sequence
          Length = 14149710

 Score =  127 bits (64), Expect = 9e-28
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                           
Query: 14      caggggtggcgtcttcatgagggaggggcccaaagcccttgtgggcggacctcccctgag 73
               ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 9819359 caggggtggcgtcttcatgagggaggggcccgaagcccttgtgggcggacctcccccgag 9819418

                                   
Query: 74      cctgtctgaggggccagccc 93
               |||||||  |||||||||||
Sbjct: 9819419 cctgtctatggggccagccc 9819438


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,765
Number of Sequences: 2685
Number of extensions: 98765
Number of successful extensions: 43
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 1
length of query: 93
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 74
effective length of database: 2,608,521,049
effective search space: 193030557626
effective search space used: 193030557626
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)