BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000004_1.0 # SECIS # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete # Reverse
         (95 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...   103   1e-20
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...    96   3e-18
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...    94   1e-17
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...    92   5e-17

>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score =  103 bits (52), Expect = 1e-20
 Identities = 71/76 (93%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                           
Query: 4       tctcgaggtggtattttctgtaagatcaggtgttcctccctcgtaggtttagaggaaaca 63
               |||| ||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct: 8940693 tctctagggggtattttctggaagatcaggtgttcctcctt-gtaggtttagaggaaaca 8940635

                               
Query: 64      ccctcatagatgaaaa 79
               ||||||||||||||||
Sbjct: 8940634 ccctcatagatgaaaa 8940619


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score = 95.6 bits (48), Expect = 3e-18
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                            
Query: 4        tctcgaggtggtattttctgtaagatcaggtgttcctccctcgtaggtttagaggaaaca 63
                |||||||| ||||||||||| ||||| |||||||||||| | | ||||||||||||||||
Sbjct: 21099733 tctcgagggggtattttctggaagattaggtgttcctcctt-gcaggtttagaggaaaca 21099791

                                
Query: 64       ccctcatagatgaaaa 79
                ||||||||||||||||
Sbjct: 21099792 ccctcatagatgaaaa 21099807


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score = 93.7 bits (47), Expect = 1e-17
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                           
Query: 13      ggtattttctgtaagatcaggtgttcctccctcgtaggtttagaggaaacaccctcatag 72
               ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct: 8884696 ggtattttctggaagatcaggtgttcctcctt-gtaggtttagaggaaacaccctcatcg 8884638

                      
Query: 73      atgaaaa 79
               |||||||
Sbjct: 8884637 atgaaaa 8884631


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score = 91.7 bits (46), Expect = 5e-17
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                            
Query: 2        catctcgaggtggtattttctgtaagatcaggtgttcctccctcgtaggtttagaggaaa 61
                |||||||||| | ||| ||||| | |||||||||||||||| | ||||||||||||||||
Sbjct: 15545705 catctcgaggggttatgttctggaggatcaggtgttcctcctt-gtaggtttagaggaaa 15545763

                                  
Query: 62       caccctcatagatgaaaa 79
                ||||||||||||||||||
Sbjct: 15545764 caccctcatagatgaaaa 15545781


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,500
Number of Sequences: 2685
Number of extensions: 105500
Number of successful extensions: 76
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 76
effective length of database: 2,608,521,049
effective search space: 198247599724
effective search space used: 198247599724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)