Output_id:  SelP.3.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434243|gb|JH378120.1|
-Program        genewise
-Query name     SelP__0 NP_001087195.1, [Se user]; [Homo sapiens (Eukaryota/Metazoa/Coelomata/Chordata/Mammals)]
-Query range    1-381      length:381   coverage: 1.0
-Profile range  240-693    length:693   coverage: 0.66    sec_positions: [309, 548, 569, 571, 572, 576, 580, 582, 587, 589, 603, 605, 607, 625, 626, 636, 638, 654, 655, 656, 657, 663, 665, 667, 679, 680, 681, 682, 688, 690]
-Average sequence identity with profile: 0.4974   (ignoring gaps: 0.5661)
-State          kept

------- alignment -------
Query   MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUYLCIIEASK <---Intron---> LEDLRVKLKKEGYSNI
        |||||||||||||||/||||||||||||||||||/||||||||||/|||||||||||||||||//||/ <   1062bp   > ||||||||/|||||||
Target  MWRSLGLALALCLLPAGGTESQDQSSLCKQPPAWNIRDQDPMLNSSGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGYSNI
        ataacgcgcgctcccgggagacgcatttacccgtaaagcgcacatagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttccggcagaaagctgaacccgatgaaacttacggctcttcttacggatgttaccg                taatgtataaagacat
        ggacggtcgtctcccaaaagcgcaccgtgacacgcaatataggccttagtgttctaacacgctggat                agacgaaaggaaatttt
                                                                  *                                         

Query   SYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDR <---Intron---> CGRLVYHLGLPFSFLTFPYVEEAIKIAYC
        |||/|||||/||/|/||||||/|||||||||||||| ||| ||||/||||||||| <   2122bp   > |||||||||||||||||||||||||||||
Target  SYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQPDVWALLNGNKDDFLIYDR                CGRLVYHLGLPFSFLTFPYVEEAIKIAYC
        ttaagaccgcttctataccaacgtgcacgtccggaccggtgctagaaggtcatga                tgccgtccgtctttcatctggggaaagtt
        catttaaagtccatgacataaatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtctcttctcataactatcag
        tttttttaacttaaacattgtgtagtttttgaaacaatcgttatacatcctatc                atcttgttttgttccaacataaactgtcct
                                                                                                            

Query   EKKCGNCSLT <---Intron---> TLKDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQ
        |||||||||| <   2998bp   > ||||||||| ||||||/|| | | ||/||/||||||||||||||||/|/|||||/||||   | ||||||||||
Target  EKKCGNCSLT                TLKDEDFCKNVSLATVNKTTEAPQPHHHHKHHHNHGHQHLGSSELSKNEQPGAPDAPTHLTSPDLHHHHKHKGQ
        gaatgattca                acagggttaagttgagaaaaggcccccccacccacgccccgaagctaagccggcggcaccatcgcccccacagc
        aaaggagctc                ctaaaatgaatctcctaaccaccacaaaaaaaaaagaaatgggatcaaaacgccacccatcccataaaaaaaga
        agatacctcg                tcatacttatatgttgtaatatagctcttgttcttatgctcctgtagtgaaaaattttttttacttcctgcgta
                                                                                                            

Query   HRQGHPENUDMPASEDLQDLQUKUURKRUIUQLLUKUPTDSELAPRSUCUHURHLIFEKTGSAITUUCKENLPSLUSUQGLRAEENITESUUUULPPAAU
        ||||||||| || || ||  | | |/|| | ||||| | |||||||||||| |||||||||||||| |||||||| ||||||||| ||||  | ||||||
Target  HRQGHPENUYMPGSEGLQHPQNKLUQKRCINQLLUKLPKDSELAPRSUCUHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEETITESCQURLPPAAU
        cacgccgattacgaggtccccaactcaataactctatcagtgtgcaatttctcccatgaagtgaatctagacctttatcgccgggaaagttctctccggt
        agagacaagatcggagtaacaaatgaaggtaattgatcaacatccgggggaggatttaacgcctcgagaaatcctgggagtgcaactcacgaggtccccg
        tagtcagcacgaatataataacgcaagatataacaagcataggttgcacattatgataaggtaccagtaaccacatcagatgaggtatattgatgtatca
                *            * **   * *   * *          * * *             **        * *            ****     *

Query   UIUQQLIPTEASASUUUUNQAKKUEUPSN
           ||||||||| /| | |/|||||||||
Target  QTSQQLIPTEASTNUSUKNKAKKUEUPSN
        caacccacaggaaatataaagaatgtcta
        acgaattccacgcagggaaacaagagcca
        gatggtacaactccacagtggagaaatac
        * *           ****     * *   
------- positions -------
Exon 1    25005656     25005858
Exon 2    25006921     25007133
Exon 3    25009256     25009373
Exon 4    25012372     25012980

--------- SECIS ---------
>SelP.3.selenocysteine.esecis:str.1 chromosome:gi|357434243|gb|JH378120.1| strand:+ positions:25013222-25013322 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:250 distance_from_cds:241
UUUUUCUUUU UCCAAUGU UCUACUUGCUUUA AUGAG AACAGAAACAU AA ACUAUGACCUAG GGGUUUCUGUU GGAU AGUUAGC AAUUUAGA AUGGAGGAAG
.....((((( ((((...( ((((.(((((... .(((( (((((((((.. .. .(((.....))) ..))))))))) )))) ....))) ))..)))) ))))))))))

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *