Output_id:  SelM.2.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434157|gb|JH378206.1|
-Program        genewise
-Query name     gi|169234774|ref|NP_001108486.1| selenoprotein M precursor [Canis lupus familiaris]
-Query range    39-142     length:142   coverage: 0.73
-Profile range  162-309    length:309   coverage: 0.48    sec_position: [168]
-Average sequence identity with profile: 0.43   (ignoring gaps: 0.4809)
-State          kept

------- alignment -------
Query   VETCGGUQLNRLKE <---Intron---> VKAFVTQDIPLY <---Intron---> HNLVMKHLPGADPELVLLGHHYEELE <---Intron---> 
        //|||||||||||| <   216bp    > |||||||||| | <   670bp    > |||||||||||||||||||  /|||| <    79bp    > 
Target  LQTCGGUQLNRLKE                VKAFVTQDIPFY                HNLVMKHLPGADPELVLLGRRHEELE                
        ccatggtccaccag                gagtgacgactt                cacgaacccgggcgcgccgcccggcg                
        tacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgggaaata                
        cgctcaaggccagg                ggtcctgctac                cccgggacccgcccgcgggccccgagg                
              *                                                                                             

Query   RIPLSEMTREEINELVQELGFYRKAAPDEAVPPEYLRAPARPAEGAPDRADL
        ||||||||| ||| ||||||||||||||  |||||/ ||/|| ||  | |||
Target  RIPLSEMTRAEINALVQELGFYRKAAPDAQVPPEYVWAPSRPPEGTSDHADL
        caccagaacggaagcgcgcgttcaggcggcgccgtgtgctaccggatgcggc
        gtctgatcgcatacttaatgtagacccacatccaatgcccgccagccaacat
        ctgccagccagccgggggcccccgggccgggccgcgggctgcggatgcctcg
                                                            
------- positions -------
Exon 1    638279       638320
Exon 2    638537       638571
Exon 3    639242       639320
Exon 4    639400       639555

--------- SECIS ---------
>SelM.2.selenocysteine.esecis:loosest.1 chromosome:gi|357434157|gb|JH378206.1| strand:+ positions:639580-639680 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:315 distance_from_cds:24
GGGACCACCC UGCCUGG GCCCUGGAGACAG AUGAA GCGCUCAGCAU CC CGGGAGUACCUCC CUUGCUGAGCGC GGAU GCCCCGU CCCCGGG CCAGCAGCGG
.......((( (((...( ((((.((.(((.( .(((( ((((((((((. .. .(((((...)))) ).)))))))))) )))) .)...)) ))).))) )).)))).))
>SelM.2.selenocysteine.esecis:loosest.2 chromosome:gi|357434157|gb|JH378206.1| strand:+ positions:642193-642285 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:2928 distance_from_cds:2637
CAGUGAUGAG GCAAGGA AAACAGUCACUAA GUGAG GAGGCUGGAGU CC CAGUUUCU GGCCCCAGCUC UGAC CUAAC CAUCUUC CCUCUCCCUC
.((((((... ....... .....)))))).( .(((( (((.((((.(( .. (((...)) ))).))))))) )))) .)... ....... ..........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAG
 *