Output_id:  SelK.3.pseudo
----------  -------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434221|gb|JH378142.1|
-Program        genewise
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    8-88       length:94    coverage: 0.86
-Profile range  21-143     length:153   coverage: 0.8    sec_position: [150]
-Average sequence identity with profile: 0.3554   (ignoring gaps: 0.411)
-State          kept

------- alignment -------
Query   QALDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKR--RGYGGSSDSRYDDGRGP ! FRAME ! PGNPPRRMGRINHLRGPNPPPM
          |||||||||||| ||/|||||||||| ||/ ||||||||/  | || |||||| ||| | ! SHIFT !  | ||||| ||||||||/||||
Target  LVLDSRSQSPWRLSLITNFFWGIAEFVVSFFKALLQQDVKKKKKRSYGNSSDSRYADGREP           -GKPPRRMDRINHLRGPSPPPM
        cgtgacactctatttaaatttgaggtggtttagccccggaaaaaaatgattgtctgggagc    2bp    -gacccaagaaacccgcaccca
        tttagggaccggtcttcattggtcatttcttacttaaataaaaaggagaccacgacaggac           -gaccggtagtaatggcgccct
        aggccgtgtagaatgaacctgaatgtgtgtcatgtgatgaaaaaactacattcatttaaga           -gagcaagtacttgacctttcg
                                                                                                      
------- positions -------
Exon 1    18512092     18512274
Exon 2    18512277     18512339

--------- SECIS ---------
>SelK.3.pseudo.esecis:loosest.1 chromosome:gi|357434221|gb|JH378142.1| strand:+ positions:18513323-18513421 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:983
GCAAAGCAAA UGCCACC AUAAGGGAUGGCU UUGAU UCCUGACUCAG AG AUUCCUGAAUGGGAAAA UUGAGUUAAGU UGAG UUA GGAGUA GACAAAGGAG
((...))... .(((((( .....)).)))). .(((( .(.(((((((( .. .(((((....))))).. )))))))).). )))) ... ...... ..........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
CTGGTAGATGAGGAAGGTAAATGTCTGCTCTAG
 L  V  D  E  E  G  K  C  L  L  *