Output_id:  SelK.11.selenocysteine
----------  ----------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434173|gb|JH378190.1|
-Program        exonerate
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    1-94       length:94    coverage: 1.0
-Profile range  1-152      length:153   coverage: 0.99    sec_position: [150]
-Average sequence identity with profile: 0.4446   (ignoring gaps: 0.5051)
-State          kept

------- alignment -------
Query   MVYISNG <---Intron---> QALDSRSQSPWRLSFITDFFWGIAEFVVLF <---Intron---> FRTLLQQDVKKRRGYGGSSDSRYDDGRG <-
        ||||||| <   3374bp   > | ||||/||||||| ||||||||||||||| <   1458bp   > |/||||||||||| || ||||||||||| < 
Target  MVYISNG                QVLDSRNQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKRRSYGNSSDSRYDDGRG   
        agtatag                cgtgacactctatttaagtttgaggtggtt                taaccccggaaaaatgattgtatgggag   
        ttatca                gattaggaaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg   
        gtccgc                agggccgtgtagaatgaatccgaatgtgta                tcacgtgacgaaaactacagtcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLRGPNPPPMAGGUGR
          635bp    > ||||||||||||||| ||/||||||||||
Target               PPGNPPRRMGRINHLHGPSPPPMAGGUGR
                     ccgacccaagaaacccgcacccagggtga
                     ccgaccggtggtaatagcgccctcggggg
                    ggaactcaagtacttgtcctttagttaaag
                                               *  
------- positions -------
Exon 1    4443015      4443033
Exon 2    4446408      4446498
Exon 3    4447957      4448040
Exon 4    4448676      4448763

--------- SECIS ---------
>SelK.11.selenocysteine.esecis:str.1 chromosome:gi|357434173|gb|JH378190.1| strand:+ positions:4449135-4449239 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:377 distance_from_cds:371
AACAAGGACU GUUCUGUG UCCUCACAGAUGA AUGAG GUCAUGCCAGG AA UUCCCUCUGCAGGGA ACUGGCCUGAC UGAC AUGCAGUU CCAUAAAU GCACAUGUUU
.....((((( (((((((( ....))))))..( .(((( ((((.(((((. .. ((((((....))))) )))))).)))) )))) .))))))) )....... ..........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *