Output_id:  SPS.1.threonine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434180|gb|JH378183.1|
-Program        genewise
-Query name     gi|73949038|ref|XP_857465.1| PREDICTED: similar to selenophosphate synthetase isoform 5 [Canis familiaris]
-Query range    1-397      length:397   coverage: 1.0
-Profile range  1-1549     length:1549  coverage: 1.0    sec_position: [696]
-Average sequence identity with profile: 0.2805   (ignoring gaps: 0.3729)
-State          kept

------- alignment -------
Query   MSTRESFNPESYELDKSFRLTRFTELKGUGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMG
        ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||/ ||||||||| |||||| ||||||||||||||||||||||
Target  MSTWESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAITPRLGIGMDTYVIPLRHSGLSLVQTTDYIYPIVDDPYMMG
        atatgttacgatgtgaatccaatagcagagtagccggccatcgttcgactcgggctcggaacacgagagatgactacagcttgcaagtatcagggctaag
        tccgactacagaataagtgtcgtcatagcggatcaattaattactaaaataaaaattgctccgtgtgtacattctgaggtcttaccaatacttaacattg
        gtgggctcgatcagcgccgacactaggcaccagcatcggaggatgggcctaatggtgactgagtctagtttcttggctgtcgtacatctcgcacctcggc
                                    *                                                                       

Query   RIACANVLSDLYAMGVTECDNMLMLLGISNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLT
        |||| ||||||||| ||||||||||||/|||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||/|||||||||||
Target  RIACTNVLSDLYAMRVTECDNMLMLLGVSNKMTDRERNKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPNNAVPGDVLVLT
        aagtaagcagctgacgagtgaacaccggaaaaagagaaagaccaacgtagggggggatgaggcagcactagcggggaagtccagtaacaaggcgggcgta
        gtcgcattgatactgtcagaatttttgtgaatcagagaattctttagtaaccaacgcctcggacttacgtttggtccctgacaatttcaactcgattttc
        gaatctcctcccaggcaatctgggctacttagacgagtaggtgtcattacatgaaaatagccaaaaccgtcgaactctccgctatcgactagagcgggga
                                                                                                            

Query   KPLGTQVAVAVHQWLDIKRGGLKIEKLHGSASNEAPKTLLAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPV
        |||||||||||||||||     |/ |/    / |  /  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||/||||||
Target  KPLGTQVAVAVHQWLDIPE---KLNKIKLVVTQEDVE--LAYQEAMMNMLRLNRTAAGLMHTFNAHAATDITGFGILGHVQNLAKQQRNEVSFIIHNLPV
        accgacgggggcctcgacg---ataaaacggacgggg--cgtcggaaaacacaaagggcacatagcggagaagtgatgcgcacgaccaaggttaacaccg
        actgcatctctaagtatca---ataatatttcaaata--tcaaacttattgtagcccgttactacacccatcgtgttgataatcaaagaatctttaatct
        actgaggagtgcgggtttg---agtgtgatccaatag--gccgggggtgggccgataacgcaccctgctccaccgtgctggcgcgggacgggcctcccgg
                                                                                                            

Query   LAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||
Target  LAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTAKIIDKPRIIEVAPQVATQNVNPTPGATS
        cgaagggaagtgaatgcacgatcgatggccattccgcggcttggaatcatgggccgtaagaggagacagaaagaccaagggccggacagacacggat
        tcatcctgacggattgttagcgcaccggtttgtcgaaccgtgcataccaagagaacgttgttaagagccattaacgttatccatccaatacccgccc
        gcggtagcgccacgtccgcgccggcacctgctaatgaatgctagagtcattaccaagttgtaggcccacacacacgccgcagagctacctcaggcct
                                                                                                         
------- positions -------
Exon 1    6916614      6917789

--------- SECIS ---------
None found

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *