Output_id:  MsrA.2.cysteine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434168|gb|JH378195.1|
-Program        genewise
-Query name     gi|27806537|ref|NP_776539.1| methionine sulfoxide reductase A [Bos taurus] gi|1205993|gb|AAC48539.1| peptide methionine sulfoxide reductase
-Query range    1-233      length:233   coverage: 1.0
-Profile range  42-398     length:398   coverage: 0.9    sec_position: [188]
-Average sequence identity with profile: 0.5351   (ignoring gaps: 0.5878)
-State          kept

------- alignment -------
Query   MLSVTRRALQLFHSLFPIPRMGDSAAKIVSPQEALPGRKEPLVVAA <---Intron---> KHHVNGNRTVEPFPEGTQMAVFG <---Intron--->
        ||| |||| || |||||/|||||||/|||||||||||||||  ||| <  154130bp  > ||||||||||||||||||||/|| <  36890bp   >
Target  MLSATRRARQLLHSLFPVPRMGDSASKIVSPQEALPGRKEPTPVAA                KHHVNGNRTVEPFPEGTQMAIFG               
        actgacagcccccactcgcaaggtgtaagaccggtcgcagcacggg                accgagaaaggctcggacagatg               
        ttcccggcgattagttctcgtgacccattgcaactcggaaccctc                caaatagagctactcagcatctt                
        gggcgggtcaccccctacgggccgaggccccggcggcggggcaag                cattctccaacatcagaaggtat                
                                                                                                            

Query    MGUFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSG <---Intron---> KTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQG <---Int
         || ||||||||| |||||||||||||||| |||||||||  <  54192bp   > |||||||||||/||||||||||||||||||||||| <  1835
Target   MGCFWGAERKFWALKGVYSTQVGFAGGYTSNPTYKEVCSE                KTGHAEVVRVVYQPEHISFEELLKVFWENHDPTQG        
         agtttgggaattgtaggttacggtgggtatacataggttg                aagcggggcggtccgcaatggccagttgacgcacg        
        gtggtggcagatgctagtaccatgtcggaccaccaaatgc                aacgacattgttaacaatgtaattattgaaaacca         
        agctcgatagacgcgaaatatatttaagctattttaacca                aatctaaccatgcgaaccttgagcgccggtccgca         
           *                                                                                                

Query   ron---> MRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQK <---Intron---> VLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGYCGL
        5bp   > ||||||||/|||||||||||/ / ||| ||||||| <  113655bp  > |||||||| ||||||| ||||||||||||||||/| |||||
Target          MRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQK                VLSEHGFGPITTDIRERQTFYYAEDYHQQYLSKNPHGYCGL
                accgagcgactctgatcatgacagggcataggtca                gctgcgtgcaaagacgacatttgggtccctcaaaccgttgc
               gtgagaaagcaagcctaccccaatacctgcaaaaaa                ttcaagtgctccatgagactaacaaaaaaatgaacagaggt
               tgcgccccctgccacccacccggggacgccagccgg                tttgcctccctcccggagtcccgacccggcgcgcccccccg
                                                                                                            

Query   GGTGVSCPLGIKK
        ||||||||/||||
Target  GGTGVSCPMGIKK
        ggaggttcagaaa
        ggcgtcgctgtaa
        gcccgccagttaa
                     
------- positions -------
Exon 1    8712110      8712245
Exon 2    8866376      8866444
Exon 3    8903335      8903454
Exon 4    8957647      8957751
Exon 5    8976107      8976213
Exon 6    9089869      9090030

--------- SECIS ---------
None found

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *