Output_id:  GPx.4.unaligned
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434173|gb|JH378190.1|
-Program        exonerate
-Query name     gi|190359363|sp|Q0EF99.2|GPX1_CALJA RecName: Full=Glutathione peroxidase 1_ AltName: Full=GSHPx-1_ Short=GPx-1_ AltName: Full=Cellular glutathione peroxidase gi|190359364|sp|Q4AEI1.2|GPX1_CEBAP RecName: Full=Glutathione peroxidase 1_ AltName: Full=GSHPx-
-Query range    49-201     length:201   coverage: 0.76
-Profile range  195-447    length:447   coverage: 0.57    sec_position: [193]
-Average sequence identity with profile: 0.4033   (ignoring gaps: 0.4569)
-State          kept

------- alignment -------
Query   TTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQ <---Intron---> ENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALP
          ||||||||| |||||||||||||||||  ||| <   250bp    > |||||||||||||||||||||||||||||| ||||||/| ||||||||||
Target  XXVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGSHPLFAFLREALP
        nngcgtacaagcccccgccgcggcgtctactgcc                gagaaggatatcatgccgggtgcatactgatggagggtccctgtccggcc
        nntgaacataataggtgcggttttgtcgaatgaa                aacaaaattactaatgcgggtacattttaagatagcgcacttcttgactc
        nncgcccggcggggccgcgcgggcccgccgtatg                gccgcagtgtccgccatttgcgcccgccggcggctgggctctccgggcga
                                                                                                            

Query   APSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA
        |||||||||| ||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||
Target  APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALLSQGPSCA
        gcagggagcaagcacaattcgtcagggtatgatcggcgggcgcatacctcaagagcgaggcctcgcatg
        ccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtactatacatacttcagcggc
        gccctctgcgcccgcccgtgacatttagctggcggctctttgcgcccccgctccgtccacgtcagcctc
                                                                             
------- positions -------
Exon 1    8939854      8939955
Exon 2    8940206      8940562

--------- SECIS ---------
>GPx.4.unaligned.esecis:str.1 chromosome:gi|357434173|gb|JH378190.1| strand:+ positions:8940597-8940689 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:34
UGCAGCACUG CUCUCUGG GGGAUUUUCAUCU AUGAG GGUGUUUCCUCU AA ACCUACA AGGAGGAACACC UGAU CUU CCAGAAA AUACCCCCUA
.(((....)) ).....(( (((((((((.... .(((( ((((((.((((( .. ....... .))))))))))) )))) ... ...)))) )).)))))..

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAG
 *