Output_id:  GPx.25.cysteine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434243|gb|JH378120.1|
-Program        blast
-Query name     BLAST_QUERY_MASTER
-Query range    29-180     length:185   coverage: 0.82
-Profile range  182-375    length:447   coverage: 0.43    sec_position: [193]
-Average sequence identity with profile: 0.3057   (ignoring gaps: 0.3787)
-State          kept

------- alignment -------
Query   VLLIVNVASKUGFT-PQYTGLNALQEKYGPRGLVVLGFPCNQFGHQEPGSNEEILNFLKYVRPGNGYGPNFPLFEKIDVNGENAHPLYTFL <---Intr
        | |/|||||    |   |  |  | ///||    || |||||||  ||  //|/ /| /       ||  ||/| || / |    | / || <   2623
Target  VSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR-----KNYGVTFPIFHKIKILGSEGEPAFRFL         
        gtcggaggagtccagaattgcagccagtgctctagcgtctactggtgcccaagggttga-----aatggatcatcaaaacgtgggcgtatc         
        tctttatcgagatcagaatctaataaatgccatgttctcgaatgacacgcgaatactcg-----aaagtctcttaatattgcagacctgtt         
        taatacgttccacacatcaaggagcagcaaccccggtcgctgtaaggccgcgaaattaa-----accaaacccccgtgtaataaatatatt         
                  *                                                                                         

Query   on---> KEECPGPLDLIGDPKEIIWSPVGTNDIKWNFEKFLVGRDGVPVKRYAPTTKPESIEKDIEAL
        bp   >                            /||| |/||  /|  || / |    | |  || ||
Target         ---------------------------RWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL
               ---------------------------atattatcgacggcggattacggcaggaacgaggc
               ---------------------------ggatgaattacagattatggcaactattgcatcct
               ---------------------------ggttggtgcctgtatggcggagactaccgtcaatg
                                                                             
------- positions -------
Exon 1    17410364     17410621
Exon 2    17407636     17407740

--------- SECIS ---------
>GPx.25.cysteine.esecis:loosest.1 chromosome:gi|357434243|gb|JH378120.1| strand:- positions:17404914-17405031 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:2604
UGGCACUGCA GCGGUGC UUUAUGUGUUCCU GUGAG GGGCAUGAGCAG AA CUGCAUAUGCCAGAGGCAGCAGAGA CUCCCCACUGCU AGAC GGAUGAUAAU GGAGCUGC GCUGGGAAUG
........(( (((..(( (((((....(((. .(((( .((((((.(((. .. .))).))))))...(((((...... .......))))) )))) ))).....)) )))))..) ))))......

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
GTTAGACAACTGATCATAAGAAAGAAAGAGGATCTATGA
 V  R  Q  L  I  I  R  K  K  E  D  L  *