Output_id:  GPx.23.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434197|gb|JH378166.1|
-Program        genewise
-Query name     gi|212549567|ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]
-Query range    28-216     length:221   coverage: 0.86
-Profile range  105-377    length:447   coverage: 0.61    sec_position: [193]
-Average sequence identity with profile: 0.4109   (ignoring gaps: 0.4663)
-State          kept

------- alignment -------
Query   MKMDCYKGVTGTIYEYGALTLNGEEYIPFKQYAGKHVLFVNVATYUGLTAQYPE <---Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAK
         //||/ |//||||||||||/|||||/||||/|||//||||||/||||| || | <   1419bp   > |||||||| |||/||||||||||||||| /
Target  FQVDCHGGMSGTIYEYGALTINGEEYVPFKQFAGKYLLFVNVASYUGLTGQYIE                LNALQEELAPFGLVVLGFPCNQFGKQEPGE
        tcggtcggaagaatgtggcaaagggtgctactggatcctgaggattgcagctag                cagccggcgctgcggcgtctactgacgcgg
        tatagaggtggctaaagctctagaaatctaatcgaattttatcgaggtcgaat                atactaaatcctgttttgtcgaatgaaacga
        cggccttcgcccttgcacccctgggtcccggttcaccctccgcccacggcgct                agtaagagtcattgctgctcccataagaaag
                                                     *                                                      

Query   NSEILLGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK <---Intron---> NSCPPTSDLLGSSNQLFWEPMKVHDI
        |||||  || <   413bp    > ||||||||||||||||||||||/|||| /|||| <   391bp    > |||||||/|/|/|//|||||||||||
Target  NSEILPSLK                YVRPGGGFVPNFQLFEKGDVNGDKEQKFYTFLK                NSCPPTSELVGTSDRLFWEPMKVHDI
        atgaccaca                tgccgggtgcatcctgagggaggagcattatca                attccatgcggatgccttgcaagcga
        acattcgta                atgcgggttcatattaagatagaaaaatactta                acgccccattgccagttgactataat
        cggtcccc                gtcaatgcccctcggtgagtgtataggacctcag                ccttacggcgtatcgccgacggctcc
                                                                                                            

Query   RWNFEKFLVGPDGVPVMRWYHRASVSTVKSDIMEYLK
        |||||||||||||/|||||/|| /|| || ||/ |//
Target  RWNFEKFLVGPDGIPVMRWHHRTTVSNVKMDILLYMR
        ctatgatcggcggacgactcccaagaagaagacttaa
        ggataatttgcagtcttggaagcctgatatatttatg
        cgctggcgggattaccgcgccgcgccctggtcgacgg
                                             
------- positions -------
Exon 1    9815902      9816061
Exon 2    9817481      9817598
Exon 3    9818012      9818111
Exon 4    9818503      9818691

--------- SECIS ---------
>GPx.23.selenocysteine.esecis:str.1 chromosome:gi|357434197|gb|JH378166.1| strand:+ positions:9819344-9819443 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:1081 distance_from_cds:652
GCGACCUACC GGUAUCAG GGGUGGCGUCUUC AUGAG GGAGGGGCCCG AA GCCCUUGUGGG CGGACCUCCCC CGAG CCUGUCU AUGGGGCC AGCCCUUAGU
...(((.... )))...(( (((((((.(((.( .(((( ((.((((.((. .. ((((....))) ))).)))).)) )))) ...)... ..)))))) ).)))))...

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
CACCGGCAGGCAGCCTAG
 H  R  Q  A  A  *