Output_id:  GPx.16.cysteine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434034|gb|JH378329.1|
-Program        genewise
-Query name     gi|212549567|ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]
-Query range    28-216     length:221   coverage: 0.86
-Profile range  105-377    length:447   coverage: 0.61    sec_position: [193]
-Average sequence identity with profile: 0.4   (ignoring gaps: 0.4526)
-State          kept

------- alignment -------
Query   MKMDCYKGVTGTIYEYGALTLNGEEYIPFKQYAGKHVLFVNVATYUGLTAQYPE <---Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAK
        ///||   |||||||||| ||/|| || |||/||| /|||||||| |||||||| <   4542bp   > |||||||||  ||/||||||||||||||  
Target  LQVDCNNNVTGTIYEYGAFTLSGEGYIQFKQFAGKPILFVNVATYCGLTAQYPE                LNALQEELKSLGVIVLGFPCNQFGKQEPGA
        ccggtaaagagaatgtggtacagggtactactggacactgaggattgtagctcg                cagccggcaacggagcgtctactgacgcgg
        tatagaaatcgctaaagctctggagatataatcgacttttatccaggtccaac                atactaaatagtgttttgtcgaatgaaacgc
        cggtccccgaccctgtaccccccggccgcggtacgccgtctacccccgatgtt                agtacgggggctactggctcccgtaaaaaaa
                                                     *                                                      

Query   NSEILLGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK <---Intron---> NSCPPTSDLLGSSNQLFWEPMKVHDI
        ||||||||| <   495bp    > ||||| ||||||||||||||||||||||||||| <   1422bp   > |/||||||||||||||||||||||||
Target  NSEILLGLK                YVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLK                NACPPTSDLLGSSNQLFWEPMKVHDI
        atgaccgca                tgccgagtgcatcctgagggaggagcagtatca                agtccatgctgttaccttgcaagcga
        acatttgta                atgcgggttcatattaagatagaaaaattctta                acgccccattgccaattgactataat
        cagatttc                gtgtatcctactcgctgagtgtaaaaggcttcgg                ccctgctttgcaacaccggtgactcc
                                                                                                            

Query   RWNFEKFLVGPDGVPVMRWYHRASVSTVKSDIMEYLK
        ||||||||||| |||||||/||  ||||||||/ |||
Target  RWNFEKFLVGPHGVPVMRWFHRIPVSTVKSDILAYLK
        ctatgatcggccggcgacttccacgaagatgacgtca
        ggataatttgcagtcttggtagtctgctacattcata
        cgctaatgtgctactcgcgccttaccacgaccggcag
                                             
------- positions -------
Exon 1    128745       128904
Exon 2    133447       133564
Exon 3    134060       134159
Exon 4    135582       135770

--------- SECIS ---------
>GPx.16.cysteine.esecis:loose.1 chromosome:gi|357434034|gb|JH378329.1| strand:+ positions:136369-136462 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:598
CCCACCUCAC AUGAAGG CAAGGACAUCUCC AUGAC GGUGGAUCCU AA AACCCUUCUGGGUC AGACCCAGCC GGAG CCU UCCUUG CUGCCUGUCC
........(( (.(..(( ((((((....... .(((( (((((.((.. .. .((((....)))). .)).))).)) )))) ... )))))) )).).)))..

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
CCTAACCCACTAGGAAATGATAGCAACTAA
 P  N  P  L  G  N  D  S  N  *