Output_id:  GPx.10.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434043|gb|JH378320.1|
-Program        genewise
-Query name     BLAST_QUERY_MASTER
-Query range    5-119      length:185   coverage: 0.62
-Profile range  116-294    length:447   coverage: 0.4    sec_position: [193]
-Average sequence identity with profile: 0.3843   (ignoring gaps: 0.418)
-State          kept

------- alignment -------
Query   QTIYDFSAKTLDGEEVSLSQYR <---Intron---> GKVLLIVNVASKUGFTP-QYTGLNALQEKYGPRGLVVLGFPCNQFGHQ <---Intron---
        /////|||| /||  |/| /|| <    74bp    > | | // ||||/|| |   || |  |  /|   || /| ||||||| | <   150bp    
Target  RSMHEFSAKDIDGHMVNLDKYR                GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ              
        ctacgttgagaggcagacgatc                gtgtagaaggtctgaaggataccggccgctggtgtcacgtctactgac              
        gctaatccaatagattataaag                gttgttcatccaggacataacattatacgacaggtgttctcgaatgaa              
        ccgcgtccgcccgcgtcgcgc                gccgcccccgccgacacagcctgtccgccaccgttggcgcccccgcggg              
                                                          *                                                 

Query   > EPGSNEEILNFLKYVRPGNGYGPNFPLFEKIDVNGENAHPLYTFLK
        > ||||||||  |        ||   | /| || |||//||||/ //|
Target    EPGSNEEIKEFAA------GYNVKFDMFSKICVNGDDAHPLWKWMK
          gcgaaggaagtgg------gtagatgataaatgaggggccctataa
          acggaaataatcc------gaatatattgatgtagaacactgagta
          gagccagcaacct------ctccaccgccgccgtgtcccggggggg
                                                        
------- positions -------
Exon 1    335111       335175
Exon 2    335250       335394
Exon 3    335545       335664

--------- SECIS ---------
>GPx.10.selenocysteine.esecis:def.1 chromosome:gi|357434043|gb|JH378320.1| strand:+ positions:336311-336399 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:871 distance_from_cds:646
CUCGGAGCCU UCCACCGG CACCC AUGAC GGCCUGCCUGC AA ACCAGCUG AUGGUGGGGC AGAC CUGAAAAC CCGGCGUG CACCCCGCCG
...((.(((. ......)) ).)). .(((( (.((((((.(( .. ....)).. ..)))))).) )))) ........ .(((((.. .....)))))

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
ATCCAGCCCAAGGGCAAGGGCATCCTGGGAAAGTGCGTGACCTCCGGGGATGGCACGGCTGGCTGGGGGGGTGGCTGCTGGGACGCTTATGCCTCCCAGGGGGCAGGATGGCTCGGGGCCATGGGGGACTGTGGAGGCTGCCATGGAGGCTCACACACTTGTGGCCTCCTGCAGGCAAGATGGTTTGCGGGCTGCTGGGACGTTCCCACTGTGTGGCCCCCTGGGGACAGGCTGGCTGGGGGCGTCCGTGGGGGGCTGCCAGGGATGCTCATGCCATGTGCTTCCTTTCCAGTGCCATCAAGTGGAACTTCACCAAGGTGA
 I  Q  P  K  G  K  G  I  L  G  K  C  V  T  S  G  D  G  T  A  G  W  G  G  G  C  W  D  A  Y  A  S  Q  G  A  G  W  L  G  A  M  G  D  C  G  G  C  H  G  G  S  H  T  C  G  L  L  Q  A  R  W  F  A  G  C  W  D  V  P  T  V  W  P  P  G  D  R  L  A  G  G  V  R  G  G  L  P  G  M  L  M  P  C  A  S  F  P  V  P  S  S  G  T  S  P  R  *