Output_id:  DI.3.selenocysteine
----------  -------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434248|gb|JH378115.1|
-Program        genewise
-Query name     gi|156547239|ref|NP_989445.2| deiodinase, iodothyronine, type II [Gallus gallus]
-Query range    1-264      length:264   coverage: 1.0
-Profile range  1-464      length:486   coverage: 0.95    sec_position: [257]
-Average sequence identity with profile: 0.3272   (ignoring gaps: 0.4332)
-State          kept

------- alignment -------
Query   MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHMVLFLSRSKSARGEWRRMLTSEGLRCVWNSFLLDAYKQ <---Intron---> VKLGGEAPNS
        ||/|||||||||||||||||||||||||||||||||/|| |||||| ||||||||||||||||| ||||||||| <   7911bp   > |||| /||||
Target  MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQ                VKLGEDAPNS
        agacaggtcaaccaccgtttatctcgctgtgaccacggcccactatacggtccacatggcctgtaatccggtac                gatggggcat
        tgttgtatttctattctttcagtttctaacttttaatttttggcaccggagggttccagtggtgagtttacaaa                tatgaaccac
        gccccacggcagatgattccccccggctcgctgcgcgggggcccgctcagggcggcagagcccggcccctccag                gagtgtcctc
                                                                                                            

Query   SVIHIAKGNDGSNSSWKSVGGKC--GTKCHLLDFANSERPLVVNFGSATUPPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVK
        ||/ // | /| //|      |   |  |||||||/ |||||||||||||||||||| || ||||||| ||||||||||||||||||| || |  |||||
Target  SVVRVS-GAEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFCKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSWSFEVK
        aggcgt-ggggggaagagacgaaggggatcccgtgacgcccggatgtgatcctaacccgttacgggtttgggtccgtagggcctggtgacggtttttgga
        gttgtc-gcaggaaggagcaaatcagccgattatcgcagctttatgcccgcctcgatcctgattaatcctcattttataacaccaggctcgaccgctata
        tggtcc-taaatcctcttcgggatgacatcttctcctgcaggcctcattattcgcggacccaggagcccgtccggccttgttaatcggatgcctgtcggg
                                                         *                                                  

Query   KHRNQEDRCAAAHQLLERFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQEVRLWLEQNFSKR
        ||//|||||||| /|||||||||||/|||| |||||||||||/||||||||||||||||||||| ||||||| |||/|||||
Target  KHQSQEDRCAAAQKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSKR
        accacggctgggcaccgctttccctcggggcagaagaggtgggtgcgtagcacaagtcggagctttaccggcctcgaataaa
        aaagaaaggcccaattagtctccaggttcagtaaacatcagtctagtgttagaatcatggagctcaataatgagtaaatgag
        acgcgatataacggtggtccggcgcatgtccgctcccatcgactatgccggagatttgaagcccccttaacgtggggtccga
                                                                                          
------- positions -------
Exon 1    38197875     38198096
Exon 2    38189391     38189963

--------- SECIS ---------
None found

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TGA
 *