genewise output
Score 276.77 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000027_1.0  104 IEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASS             
                     ++ FCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASS             
                     FQSFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASS             
gi|357434160|-157812 tctttacagttcgatggcgagataatgaaagggagtt             
                     tactgatcgacaatatacagataagtgtaggaatccc             
                     tgttcagtatttactcttgaattaagagaataatcca             


SPP00000027_1.0  141                           QSPHIKSNLLSGSLQSLWRAVTG 
                                               QSPH+KSNLLSGSLQSLWRAVTG 
                               G:G[gga]        QSPHVKSNLLSGSLQSLWRAVTG 
gi|357434160|-157701 GGTAAGAC  Intron 1   CAGGAcaccgatacctgaccactcggag 
                      <1-----[157700:15371-1>  agcatacattcggtagtggctcg 
                                               gcccagatacaactgcgggagcc 


SPP00000027_1.0  165 PLFDFQGDPAQQGGTLILGP                          NNI 
                     PLFDFQGDPAQQGGTLILGP                          NNI 
                     PLFDFQGDPAQQGGTLILGP          G:G[ggt]        NNI 
gi|357434160|-153638 cctgtcggcgccggacatgcGGTGAGCA  Intron 2   TAGGTaaa 
                     cttatagaccaaggctttgc <1-----[153577:15012-1>  aat 
                     tctttaacatgatgcctata                          ccc 


SPP00000027_1.0  189 HFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV            
                     HFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV            
                     HFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV            
gi|357434160|-150113 ctaccgaaatgcacaatgtccgggccgataaactgacg            
                     attagagagtaaactacttattgtaatatcagccttat            
                     ttacttgtggtcatccttagtaatgtgctacgtacctg            


//
Making a G in phase 1 intron
Making a G in phase 1 intron
>gi|357434160|gb|JH378203.1|:subseq(2042915,307851).pep
FQSFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHVKSNLLSGSLQSLWRAVT
GPLFDFQGDPAQQGGTLILGPGNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSV
IHV
//
>gi|357434160|gb|JH378203.1|:subseq(2042915,307851).[157812:149998].sp
TTTCAGTCTTTTTGCAAACTGACTGGATATTCTCATGAAATCTATGTCGATCCTGAGAGA
GAAATTTATAAAAGATTGGGAATGAAAAGAGGTGAAGAAATTGCCTCCTCAGGACAGAGC
CCCCACGTAAAGTCAAATCTACTCTCAGGAAGCCTTCAGAGCCTGTGGCGGGCAGTGACC
GGCCCTCTCTTTGATTTTCAAGGAGACCCAGCTCAGCAAGGTGGGACCCTCATTTTAGGT
CCAGGTAACAACATCCATTTTATACACCGTGATAGGAATAGGTTGGATCACAAACCTATC
AACTCTGTTTTACAGCTTGTAGGAGTTCAGCATGTGAACTTTACAAACAGGCCTTCAGTC
ATCCATGTG
//
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	match	157812	150000	276.77	-	.	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	cds	157812	157701	0.00	-	0	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	intron	157700	153710	0.00	-	.	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	cds	153709	153578	0.00	-	2	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	intron	153577	150125	0.00	-	.	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
gi|357434160|gb|JH378203.1|:subseq(2042915,307851)	GeneWise	cds	150124	150000	0.00	-	2	gi|357434160|gb|JH378203.1|:subseq(2042915,307851)-genewise-prediction-1
//