genewise output
Score 300.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000025_1.0    1 MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLVAASA+VRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
gi|357434246|-168416 aaccccccgggtgggcaggtgacgggcaaataactgagcccatca     
                     tgtttttttccccttggacccatggtcgagtataaccgcttatat     
                     ggtggtcgggggggcgcgcgccgctgccgaagggccggggcgcgt     


SPP00000025_1.0   46                           VSXGYRRVFEEYMRVISQRYPDI 
                                               VSXGYRRVFEEYMRVISQRYPDI 
                                C:C[tgt]       VSXGYRRVFEEYMRVISQRYPDI 
gi|357434246|-168281 TGGTGAGTA  Intron 1   CAGTgttgtacgtggtacgaacctcga 
                       <2-----[168279:15304-2> tcggaggttaaatgttgagacat 
                                               tcattggatggcggttcggcacc 


SPP00000025_1.0   70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
gi|357434246|-152971 cagggatccccatAGGTAAGAA  Intron 2   TAGAcagttctgta 
                     gtagaaatcacta  <2-----[152930:15239-2> atccttctta 
                     caaagtcctaaat                          caatcgacca 


SPP00000025_1.0   94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
gi|357434246|-152358 cgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgttttctcgattccgggcaatg                  


SPP00000025_1.0  126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
gi|357434246|-152262 GTATGTA  Intron 3   TAGgtgtaagtttaaaagactataggtga 
                     <0-----[152262:15008-0>tacgttttttgattaaagtccgctat 
                                            ctatggtccgccgtgcgtgaatatga 


SPP00000025_1.0  152 TLN                          VPVWSKL              
                     TLN                          +P W ++              
                     TLN          D:G[ggt]        IPFWPRM              
gi|357434246|-150008 ataGGTAGGTT  Intron 4   CAGGTacttcaa              
                     cta <1-----[149998: 1067-1>  tctgcgt              
                     tat                          cccgcgg              


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|357434246|gb|JH378117.1|:subseq(24467380,318416).pep
MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMR
VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNGIPFWPRM
//
>gi|357434246|gb|JH378117.1|:subseq(24467380,318416).[168416:1042].sp
ATGAGGCTTCTGCTGCTTCTCCTGGTGGCGGCGTCGGCGGTGGTCCGGAGCGAGGCCTCG
GCCAACCTGGGCGGTGTGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCGCTG
CTCAAGTTCCAGATTTGTGTTTCCTGAGGTTATAGGCGGGTATTTGAGGAGTACATGCGG
GTTATTAGCCAGCGGTACCCAGACATCCGCATAGAAGGAGAGAATTACCTCCCTCAACCA
ATATATAGACACATAGCATCTTTCCTGTCAGTCTTCAAACTAGTATTAATAGGCTTAATA
ATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGG
GGCCAAGAAAATAAGGTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAG
AACCAGTGTATGTCAACAGGTGCATTTGAGATAACTTTAAATGGTATCCCCTTCTGGCCC
AGGATG
//
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	match	168416	1044	300.45	-	.	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	cds	168416	168280	0.00	-	0	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	intron	168279	153042	0.00	-	.	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	cds	153041	152931	0.00	-	1	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	intron	152930	152390	0.00	-	.	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	cds	152389	152263	0.00	-	1	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	intron	152262	150087	0.00	-	.	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	cds	150086	149999	0.00	-	0	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	intron	149998	1067	0.00	-	.	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	GeneWise	cds	1066	1044	0.00	-	2	gi|357434246|gb|JH378117.1|:subseq(24467380,318416)-genewise-prediction-1
//