genewise output
Score 811.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000015_1.0    1 MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
gi|357434111|-184234 aggtgtgacgccggtgataGTAGCGC  Intron 1   CAGtagggaa 
                     tcgaaatgcaatcgtaaaa<0-----[184177:17162-0>agctaca 
                     gtccacgcggggtcttgcg                       cttgcct 


SPP00000015_1.0   27 PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
gi|357434111|-171600 cctctgaccttaaagaGTAAGAT  Intron 2   TAGgtcatcgcac 
                     ctctattactgactta<0-----[171552:17113-0>ttccgtccat 
                     attgtggtatgctaag                       atttggtctg 


SPP00000015_1.0   53 ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS          A:A[gca]      
gi|357434111|-171101 aattgtccggtatccagttgcgttgtGGTAAGAA  Intron 3      
                     tctcgttttttattttcatacatacc <1-----[171022:168834  
                     atttctggcacttaagactttcttca                        


SPP00000015_1.0   79      PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
gi|357434111|-168836 CAGCAcgcacgcgtgtagggacatggtac                     
                     -1>  cgaaatcagtgtttgttattcact                     
                          gtcgtgtcgtgtggcccccaccta                     


SPP00000015_1.0  104                           GVDGKQARRTNSSTPLGELFDHG 
                                               GVDGKQARRTNSSTPLGELFDHG 
                               D:D[gat]        GVDGKQARRTNSSTPLGELFDHG 
gi|357434111|-168759 GGTAAGGA  Intron 4   CAGATggggacgcaaataactggctgcg 
                      <1-----[168758:16568-1>  gtagaacggcacgcctgattaag 
                                               tacagatgactcctcaggttccc 


SPP00000015_1.0  128 LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
gi|357434111|-165611 cgatttgttggagttatgagtaggagtgctccctggttttactctgata 
                     taggcgtatttctacttgggccgtgttttatttgttttctttcagaaaa 
                     gttgattcttatgtcctaaaattcttttttcgagatgttccgctgagtc 


SPP00000015_1.0  177 TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
gi|357434111|-165464 agactcctgtgaacgGTAAGTA  Intron 5   CAGaattgtagagg 
                     cgttttcggaatgat<0-----[165419:16409-0>ctcttattcct 
                     agttcgagatctcgg                       ttttccagtgt 


SPP00000015_1.0  203 VGVEAWYEPFLFNFLYRDLFTAMII                         
                     VGVEAWYEPFLFNFLYRDLFT MII                         
                     VGVEAWYEPFLFNFLYRDLFTTMII          G:G[ggc]       
gi|357434111|-164062 gggggttgctctatttagctaaaaaGGTAAGAA  Intron 6       
                     tgtacgaactttattagattccttt <1-----[163986:155574   
                     gaagcgtatcgttcatacactagtt                         


SPP00000015_1.0  228      CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF           R:R[aga]       SYK 
gi|357434111|-155576 TAGGCtgttgaccaattattAGGTAAGTA  Intron 7   CAGAata 
                     -1>  gctgtctctgttatt  <2-----[155524:15411-2> gaa 
                          taatgttagtaactc                          cta 


SPP00000015_1.0  248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
                     NNTLK NSVYEA+VP FSPCLLFILSTAWILWSPSDILE+HPR+FYFMV 
                     NNTLKHNSVYEAVVPFFSPCLLFILSTAWILWSPSDILEIHPRIFYFMV 
gi|357434111|-154107 aaatacatgtggggctttcttctattagtacttctgatgaccaatttag 
                     aactaaactaacttcttccgtttttcccgttgcccattatacgttattt 
                     ttcgactactatgtccttacggctgtacgctgatattagattaacctgt 


SPP00000015_1.0  297 GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFAN T                       CQLIVCQMSSTRCPTLNW 
                     GTAFANIT                       CQLIVCQMSSTRCPTLNW 
gi|357434111|-153960 gagtgaaaGTAAGAT  Intron 8   CAGtccagtcaaaactcatat 
                     gcctcatc<0-----[153936:15270-0>gatttgatggcggcctag 
                     aactctca                       tggttcagttcgtatgtg 


SPP00000015_1.0  323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGV+SY+ESI+LYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV       
gi|357434111|-152646 ccgccttggtggatggtttagaaactataagtacgcactggcg       
                     tttcttttttttatgtccatagtttactccctctcataagtgt       
                     ggttccgtcagacaagctctgctcataaattctgcccttaaag       


SPP00000015_1.0  366                        VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
gi|357434111|-152517 GTGAGTA  Intron 9   TAGgaccaactcatctttaacatgtcgag 
                     <0-----[152517:15009-0>taatggatatactctgacacagtgta 
                                            agggccttgtcccaggaacataaaga 


SPP00000015_1.0  392 EKNIGL                                            
                     EKNIGL                                            
                     EKNIGL                                            
gi|357434111|-150017 gaaagc                                            
                     aaatgt                                            
                     agttcg                                            


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
>gi|357434111|gb|JH378252.1|:subseq(4045499,321624).pep
MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTTMIIGCALCVTLPMSLL
NFFRSYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILWSPSDILEIHPRIFYFMVGTAF
ANITCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIH
YGVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL
//
>gi|357434111|gb|JH378252.1|:subseq(4045499,321624).[184234:149998].sp
ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGTAC
AGTGCTGTGGACACCAATCCACTTTCTCTGTATGTGATGCATCCATTTTGGAACACTATA
GTAAAGGTATTTCCTACTTGGCTGGCTCCCAATCTGATAACTTTTTCTGGCTTTCTGCTG
GTCGTATTCAATTTTCTACTAATGGCATACTTTGATCCTGACTTTTATGCCTCAGCACCG
GGTCACAAGCATGTGCCTGACTGGGTTTGGATTGTGGTGGGCATCCTCAACTTCGTAGCC
TACACTCTAGATGGTGTAGACGGAAAGCAAGCTCGGAGAACCAATTCCAGCACTCCCTTA
GGGGAGCTTTTTGACCACGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAACTGTG
TATTCCATCTTTGGAAGAGGATCAACTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTA
TGGGTAGTTTTGTTTTCTTTCATCCTGTCCCATTGGGAAAAGTATAACACAGGGATTCTT
TTCCTGCCATGGGGATATGACATTAGCCAGGTGACTATTTCTTTTGTCTACATAGTGACT
GCGGTTGTGGGAGTAGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGAC
CTATTCACTACAATGATTATTGGCTGTGCATTATGTGTGACTCTTCCAATGAGTTTATTA
AACTTTTTCAGAAGCTATAAAAATAATACCTTGAAACACAATTCAGTCTATGAAGCTGTG
GTTCCCTTCTTTTCTCCATGCTTGCTGTTCATTTTGTCTACAGCCTGGATCCTTTGGTCA
CCTTCAGATATTTTAGAGATACATCCTAGAATATTCTACTTTATGGTTGGAACAGCCTTT
GCCAATATCACATGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTG
AATTGGCTGCTGGTTCCTCTCTTCTTGGTTGTCTTAGTGGTAAACTTAGGAGTGTCCTCT
TACATTGAGAGCATTATCCTATATACATTAACAACTGCTTTCACTCTGGCCCACATCCAT
TATGGAGTACGAGTGGTAAAGCAGCTGAGCAGCCATTTTCAGATTTACCCCTTCTCATTG
AGGAAACCAAACTCAGATTGACTAGGAATGGAAGAAAAGAATATTGGCCTG
//
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	match	184234	150000	811.57	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	184234	184178	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	184177	171622	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	171621	171553	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	171552	171132	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	171131	171023	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	171022	168834	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	168833	168759	0.00	-	2	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	168758	165683	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	165682	165420	0.00	-	2	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	165419	164096	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	164095	163987	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	163986	155574	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	155573	155525	0.00	-	2	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	155524	154118	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	154117	153937	0.00	-	1	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	153936	152701	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	152700	152518	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	intron	152517	150096	0.00	-	.	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	GeneWise	cds	150095	150000	0.00	-	0	gi|357434111|gb|JH378252.1|:subseq(4045499,321624)-genewise-prediction-1
//