genewise output
Score 451.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000008_1.0    1 MTTQLRVVHLLPLLLACFVQTSPKQEKMK                     
                     MT QLR V LLP+LLACFVQ SPKQ KMK                     
                     MTVQLRAVRLLPVLLACFVQASPKQ-KMK                     
gi|357434034|-113445 aagctaggccccgccgttgcgacac aaaGTGTGTG  Intron 1    
                     tctatgctgttctttcgttacgcaa ata<0-----[113361:109823
                     gtagagcctgcctcacctgaatcgg ggg                     


SPP00000008_1.0   30    MDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL 
                        MDCH+D+KGTIYDYEAI LNK EYV FK+YVGKH+LFVNVATYCGL 
                        MDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGL 
gi|357434034|-109825 CAGagtcagcagaatgtggaacaaagtgctactggacgctgaggattgc 
                     -0>tagagaaagctaaaactttaaaaatctagatgaattttatccaggt 
                        gttcataaccctccaccggtggattccggtgcgccctccgcccttg 


SPP00000008_1.0   76 TAQYP                          LNALQEELKPYGLVVLGF 
                     TAQYP                          LNALQEELKP+GLVVLGF 
                     TAQYP          E:E[gaa]        LNALQEELKPFGLVVLGF 
gi|357434034|-109684 agctcGGTAAGAA  Intron 2   CAGAAcagccggcactgcggtgt 
                     ccaac <1-----[109668:10763-1>  tactaaatactgttttgt 
                     agatt                          gtacgggggcttatggct 


SPP00000008_1.0  100 PCNQFGKQEPGDNKEILPGL                          YVR 
                     PCNQFGKQEPGDNKEILPGL                          YVR 
                     PCNQFGKQEPGDNKEILPGL           K:K[aag]       YVR 
gi|357434034|-107577 ctactgacgcggaagaccgcAAGTAAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaaaattcgt  <2-----[107515:10709-2> atg 
                     cccgtagaaaatcggtttgc                          tct 


SPP00000008_1.0  124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFLK                    
                     PGGGFVP+FQLFEKGDVNGEKEQKVFSFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKVFSFLK                    
gi|357434034|-107088 cgggtgcatcctgagggaggagcagtatta                    
                     cgggttcatattaagatagaaaaattgtta                    
                     agaatactcgttgaatgttaaagaccccgg                    


SPP00000008_1.0  154                        HSCPHPSEILGTFKSISWDPVKVHDI 
                                            HSCPHPSEILGTFKSISWDPVKVHDI 
                                            HSCPHPSEILGTFKSISWDPVKVHDI 
gi|357434034|-106998 GTGAGTG  Intron 4   TAGcttccctgatgatatattgcgagcga 
                     <0-----[106998:10544-0>acgcaccattgctactcgactataat 
                                            cctttctgtgcacatacgctcactcc 


SPP00000008_1.0  180 RWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK        
                     RWNFEKFLVGPDGIPVMRWSH+ATVS VK DI AYLKQF+TK        
                     RWNFEKFLVGPDGIPVMRWSHQATVSLVKADIEAYLKQFRTK        
gi|357434034|-105364 ctatgatcggcggacgacttccgagatgaggaggttactaaa        
                     ggataatttgcagtcttggcaacctgttacatacataatgca        
                     tgctagcggtctactcgcgccgcaccacgaccgccggacaca        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|357434034|gb|JH378329.1|:subseq(1,330530).pep
MTVQLRAVRLLPVLLACFVQASPKQKMKMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVG
KHVLFVNVATYCGLTAQYPELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLKY
VRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRW
NFEKFLVGPDGIPVMRWSHQATVSLVKADIEAYLKQFRTK
//
>gi|357434034|gb|JH378329.1|:subseq(1,330530).[113445:105237].sp
ATGACTGTACAGTTAAGGGCCGTCCGTCTGCTCCCCGTTCTCCTAGCCTGCTTTGTGCAA
GCAAGTCCCAAGCAGAAGATGAAGATGGATTGTCACAGAGATCAAAAAGGCACCATCTAT
GACTACGAAGCCATCATGCTGAATAAGAAGGAATATGTTCCCTTCAAGCGGTATGTGGGC
AAGCACGTCCTCTTTGTCAACGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCTGAA
CTGAATGCACTCCAGGAGGAGCTGAAGCCCTTTGGTCTAGTTGTGTTGGGCTTTCCCTGC
AACCAGTTTGGAAAGCAAGAACCAGGAGATAACAAGGAGATTCTTCCTGGGCTCAAGTAT
GTCCGTCCAGGGGGAGGATTTGTACCCAATTTCCAGCTTTTTGAGAAAGGAGATGTGAAT
GGTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGCACTCCTGTCCTCATCCCTCTGAG
ATTTTGGGCACATTCAAATCTATATCCTGGGACCCTGTCAAAGTCCATGACATCCGTTGG
AACTTTGAAAAGTTCCTGGTGGGTCCCGATGGAATCCCTGTCATGCGCTGGTCCCACCAG
GCCACAGTCAGCTTAGTCAAGGCAGACATCGAGGCCTACTTGAAGCAATTCAGAACCAAA
//
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	match	113445	105239	451.05	-	.	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	cds	113445	113362	0.00	-	0	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	intron	113361	109823	0.00	-	.	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	cds	109822	109669	0.00	-	0	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	intron	109668	107634	0.00	-	.	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	cds	107633	107516	0.00	-	2	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	intron	107515	107099	0.00	-	.	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	cds	107098	106999	0.00	-	1	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	intron	106998	105443	0.00	-	.	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	GeneWise	cds	105442	105239	0.00	-	0	gi|357434034|gb|JH378329.1|:subseq(1,330530)-genewise-prediction-1
//