genewise output
Score 524.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000001_1.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLP PGLWLKRLWVLLEVAVHV VGK+LL LFPDRVK+NILAMG+KTG 
                     MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTG 
gi|357434255|-168886 agccgcgctcaactgctggggcggggacccattcgagaaaacgaggaag 
                     tgtcgcgtgtagtgtttatctatctgatttcttcagtaaattctgaacg 
                     gggcgagaggggcggcgggtgtgtgcagtgagtacacggcaacgccggt 


SPP00000001_1.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNP+FSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPNFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
gi|357434255|-168739 aaaacatacgatacattaacttttgcagctcccggaagcggcgcatcgg 
                     tcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagctt 
                     gcgctccccccgcgctcccgtcgccggctggaagcgtgagtgcaccagc 


SPP00000001_1.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                      LSGQRCNIW+FMQ                          NRPLVLNFG 
                     HLSGQRCNIWDFMQ          G:G[ggc]        NRPLVLNFG 
gi|357434255|-168592 cctgcataatgtacGGTCAGGA  Intron 1   CAGGCaaccgcatg 
                     atcgaggatgatta <1-----[168549:15856-1>  agctttatg 
                     ccaaggcctgctga                          cgcgggtta 


SPP00000001_1.0  123 SCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCTXPSFMFKFDQFKRL EDFSS+ADFL+IYIEEAHAS            
                     SCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS            
gi|357434255|-158533 atatcttatatgctaacaggtatgggtcaatagggcgt            
                     ggcgcctttataatagtcaatgctcattttataacacc            
                     ttcatatgcatcacgattacttcaattcctctaaataa            


SPP00000001_1.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNN+DIRNHQNLQDRLQAA 
                               D:D[gat]        GWAFKNNVDIRNHQNLQDRLQAA 
gi|357434255|-158419 GGTACAGG  Intron 2   TAGATgtgtaaaggaaaccaccgcccgg 
                      <1-----[158418:15323-1>  ggctaaatatgaaaataagtacc 
                                               cgtcgccgccgtcgctgccggac 


SPP00000001_1.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSS+LYAALPERLYIIQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK       
gi|357434255|-153158 ccccgaacctcggggaacacaagctggccgactaacggaacta       
                     atttcggcagctttactaaaggatacctcagtattaaggttaa       
                     tgggcgccgctgagcgggcgccgccaagtggccacgacgcccg       


SPP00000001_1.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GKSGPWNYNPEEVR VLEKLHS     
                                            GKSGPWNYNPEEVRDVLEKLHS     
gi|357434255|-153029 GTGGTGA  Intron 3   CAGgatgctatacgggcggcgacca     
                     <0-----[153029:15006-0>gacgcgaaacaatgattaatag     
                                            tacctgcctagattttgaacct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|357434255|gb|JH378108.1|:subseq(31482165,318886).pep
MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTGMTRNPNFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVHLSGQRCNIWDFMQGNRPLVLN
FGSCTXPSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHASDGWAFKNNVDIRNHQNLQDR
LQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYKGKSGPWNYNPEEV
RDVLEKLHS
//
>gi|357434255|gb|JH378108.1|:subseq(31482165,318886).[168886:149998].sp
ATGGGGCTGCCCGGGCCAGGGCTATGGCTGAAGAGGCTCTGGGTGCTCTTGGAGGTGGCT
GTGCATGTGGCTGTGGGCAAACTGCTTCTGACATTGTTTCCAGACAGAGTCAAGAAGAAC
ATACTAGCCATGGGCGACAAGACGGGTATGACCAGGAACCCTAACTTCAGCCACGACAAC
TGGATCCCGACCTTTTTCAGCACCCAGTATTTCTGGTTCGTCCTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGACTGAGCTAGGGGGTCTGGCCCCAAACTGCCCAGTGGTCCACCTC
TCAGGACAGAGGTGCAACATTTGGGACTTTATGCAAGGCAACAGGCCCCTGGTGCTGAAT
TTTGGAAGTTGTACCTGACCTTCATTTATGTTCAAATTTGACCAATTCAAGAGACTTACT
GAAGACTTTAGTTCCGTAGCAGATTTTCTCATCATTTACATTGAAGAAGCACATGCATCA
GATGGCTGGGCTTTCAAGAACAACGTGGACATCAGGAATCACCAGAACCTTCAGGACCGC
CTGCAGGCAGCCCATCTGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTAGTGGACACG
ATGCAGAACCAGAGCAGCGAGCTCTACGCAGCACTGCCTGAGAGGCTCTACATAATCCAG
GAAGGCAGGATCCTCTACAAGGGTAAATCCGGCCCTTGGAACTACAATCCAGAGGAAGTT
CGTGATGTTCTGGAAAAACTCCACAGT
//
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	match	168886	150000	524.61	-	.	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	cds	168886	168550	0.00	-	0	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	intron	168549	158563	0.00	-	.	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	cds	158562	158419	0.00	-	2	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	intron	158418	153230	0.00	-	.	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	cds	153229	153030	0.00	-	2	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	intron	153029	150066	0.00	-	.	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
gi|357434255|gb|JH378108.1|:subseq(31482165,318886)	GeneWise	cds	150065	150000	0.00	-	0	gi|357434255|gb|JH378108.1|:subseq(31482165,318886)-genewise-prediction-1
//