genewise output
Score 214.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000031_1.0    1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEY                     
                     M+GEPGQTSVAP P +VEPGSGVRIVVEY                     
                     MNGEPGQTSVAPLPGKVEPGSGVRIVVEY                     
gi|357434092|g150000 aaggcgcatggcccgaggcgaggcagggt                     
                     tagacgacctcctcgatacgggtgtttaa                     
                     gcggggggcagctcggcggctgcccgggc                     


SPP00000031_1.0   30                           EPCGFEATYLELASAVKEQYPGI 
                                               EPCGFEATYLELASAVKEQYPGI 
                                C:C[tgt]       EPCGFEATYLELASAVKEQYPGI 
gi|357434092|g150087 TGGTGAGCG  Intron 1   CAGTgctgtggatcgcgaggagctcga 
                       <2-----[150089:15020-2> acggtaccatatcgctaaaacgt 
                                               accccggccgggcttggggtgct 


SPP00000031_1.0   54 EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT          G:G[ggc]        AFEIEINGQLVFSK 
gi|357434092|g150272 gagtccggaGGTGAGGC  Intron 2   CAGGCgtgagaagccgtta 
                     atacgtggc <1-----[150300:15075-1>  ctatatagatttca 
                     gcggcggca                          ctgagctaaggccg 


SPP00000031_1.0   78 LENGGFPYEKD                       LIEAIRRASNGETLE 
                     LENGGFPYEKD                       LIEAIRRASNGE LE 
                     LENGGFPYEKD                       LIEAIRRASNGEPLE 
gi|357434092|g150796 cgaggtctgagGTAAGTA  Intron 3   TAGcaggacagaaggccg 
                     taaggtcaaaa<0-----[150829:15091-0>ttactggcgagacta 
                     ggcgctctgat                       ctgccaacccaacaa 


SPP00000031_1.0  104 KITNSRPPCVIL                                      
                     KITNSRPPC+IL                                      
                     KITNSRPPCIIL                                      
gi|357434092|g150956 aaaaaccctaac                                      
                     atcaggccgttt                                      
                     gccccttccccg                                      


//
Making a C in phase 2 intron
Making a G in phase 1 intron
>gi|357434092|gb|JH378271.1|:subseq(3075523,300991).pep
MNGEPGQTSVAPLPGKVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG
GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGEPLEKITNSRPPCIIL
//
>gi|357434092|gb|JH378271.1|:subseq(3075523,300991).[150000:150991].sp
ATGAACGGGGAGCCGGGGCAGACGTCCGTAGCGCCCCTTCCCGGGAAGGTCGAGCCGGGC
AGTGGGGTCCGCATCGTGGTGGAGTACTGTGAACCCTGCGGCTTCGAGGCGACCTACCTG
GAGCTGGCCAGTGCTGTGAAGGAGCAGTATCCGGGCATTGAGATCGAGTCGCGCCTGGGG
GGCACAGGCGCCTTTGAGATAGAGATCAATGGACAACTGGTGTTCTCCAAGCTGGAGAAC
GGGGGCTTTCCCTATGAGAAAGATCTCATTGAGGCCATCCGAAGAGCCAGCAACGGAGAA
CCCCTAGAAAAGATCACCAACAGCCGTCCTCCCTGCATCATCCTG
//
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	match	150000	150991	214.32	+	.	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	cds	150000	150088	0.00	+	0	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	intron	150089	150201	0.00	+	.	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	cds	150202	150299	0.00	+	1	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	intron	150300	150751	0.00	+	.	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	cds	150752	150828	0.00	+	2	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	intron	150829	150910	0.00	+	.	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	GeneWise	cds	150911	150991	0.00	+	0	gi|357434092|gb|JH378271.1|:subseq(3075523,300991)-genewise-prediction-1
//