genewise output
Score 71.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000030_1.0   16 KSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGK          
                     KSKY QLKKKLEDE+   LDIC  G+PQ T FFEVMV  K          
                     KSKYFQLKKKLEDELSRCLDICSNGSPQVTKFFEVMVV-K          
gi|357434224|g150042 atattccaaatgggttatcgataagtccgaattggagg a          
                     acaatataaataaatcggtatggagccatcattatttt a          
                     gcgttgcgggaatgacacgcccctttcgccgctaggaa g          


SPP00000030_1.0   56                           IHSKKKGDGYVDTESKFLKLVAA 
                                                 S ++GDGY+  E+KFLKLV   
                                L:C[tgt]       WFSTRRGDGYIKGENKFLKLVTT 
gi|357434224|g150159 TGGTGATAT  Intron 1   TAGTtttaaagggtaaggaatcacgaa 
                       <2-----[150161:15020-2> gtccgggagatagaaattattcc 
                                               gctaaattactgggcatggagcc 


SPP00000030_1.0   80 IKAALAQ                                           
                     IKA LAQ                                           
                     IKAGLAQ                                           
gi|357434224|g150272 aaggtgc                                           
                     tacgtca                                           
                     catcgta                                           


//
Making a C in phase 2 intron
>gi|357434224|gb|JH378139.1|:subseq(4341761,300152).pep
KSKYFQLKKKLEDELSRCLDICSNGSPQVTKFFEVMVVKCWFSTRRGDGYIKGENKFLKL
VTTIKAGLAQ
//
>gi|357434224|gb|JH378139.1|:subseq(4341761,300152).[150042:150292].sp
AAGTCCAAGTATTTTCAGCTCAAGAAGAAGTTAGAAGATGAGTTATCCAGATGCCTGGAC
ATCTGCAGCAATGGTTCTCCCCAGGTCACCAAGTTCTTTGAAGTGATGGTAGTAAAGTGT
TGGTTCTCTACAAGAAGAGGTGATGGATACATTAAGGGGGAGAACAAATTTCTGAAGCTA
GTGACCACCATCAAAGCTGGCTTGGCTCAA
//
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	GeneWise	match	150042	150292	71.92	+	.	gi|357434224|gb|JH378139.1|:subseq(4341761,300152)-genewise-prediction-1
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	GeneWise	cds	150042	150160	0.00	+	0	gi|357434224|gb|JH378139.1|:subseq(4341761,300152)-genewise-prediction-1
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	GeneWise	intron	150161	150201	0.00	+	.	gi|357434224|gb|JH378139.1|:subseq(4341761,300152)-genewise-prediction-1
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	GeneWise	cds	150202	150292	0.00	+	1	gi|357434224|gb|JH378139.1|:subseq(4341761,300152)-genewise-prediction-1
//