genewise output
Score 395.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000023_1.0    1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSLCL LCLCL  AAALGSAQS                  
                     MSPRRTLPRPLSLCLCLCLCLAGAAALGSAQS                  
gi|357434240|gb99384 aacccaccccctctctctctcgggggcgagct                  
                     tgcggctcgctctgtgtgtgtcgccctggcac                  
                     gcgggccgcccgtcccccccgcgcgtgatggc                  


SPP00000023_1.0   33                           SCRDKKNCKVVFSQQELRKRLTP 
                                               SCRDKKNCKVVFSQQELRKRLTP 
                               G:G[ggg]        SCRDKKNCKVVFSQQELRKRLTP 
gi|357434240|gb99480 GGTAAGTT  Intron 1   CAGGGttagaaataggttccgcaaccac 
                      <1-----[99481:149991-1>  cggaaaagatttcaaatgagtcc 
                                               atgtagctggctcggaggggaac 


SPP00000023_1.0   57 LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE           S:S[agt]       AFEGEYTHHKD 
gi|357434240|g150063 cctcgacgagagAGGTAAGGT  Intron 2   CAGTgtgggtaccag 
                     taaatcaaagca  <2-----[150101:15169-2> ctagaacaaaa 
                     ggctctggagca                          ccaaacatcat 


SPP00000023_1.0   81 PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF           K:K[aaa]       SETKFDSGS 
gi|357434240|g151733 cgatatggtgacttAAGTAAGTA  Intron 3   CAGAtgaatgtgt 
                     cgtaagttggcctt  <2-----[151777:18267-2> cacatacgc 
                     taatattttatagt                          aagatccta 


SPP00000023_1.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+SEAITFTDDFSYGM 
                               G:G[ggt]        WPSFHDVISSEAITFTDDFSYGM 
gi|357434240|g182707 GGTATGTT  Intron 4   CAGGTtcttcggaatggaataggtttga 
                      <1-----[182708:26609-1>  gcctaattgcactctcaatcagt 
                                               gtacctgcttgacacatctctgg 


SPP00000023_1.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
gi|357434240|g266170 caggaattcGTGAGTT  Intron 5   CAGtggccgcatgggcccag 
                     agtacggca<0-----[266197:27493-0>ggcatgattaagcgccg 
                     cggaacctg                       tttctgcttttgttatg 


SPP00000023_1.0  155 KRYCINSAALSFTPADSSGTA-EGGSGVASPAQADKAEL           
                     KRYCINSAALSFTPADS G A EGGSGVASPAQADKAEL           
                     KRYCINSAALSFTPADSGGAAAEGGSGVASPAQADKAEL           
gi|357434240|g274984 aattaatggtttacggaggggggggagggacgcggaggc           
                     agagtaccctctcccagggcccaggggtcgccacaacat           
                     aaccctgtcatcatgtcttgccgactgcccacgacaagc           


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>gi|357434240|gb|JH378123.1|:subseq(8094250,425100).pep
MSPRRTLPRPLSLCLCLCLCLAGAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYH
VTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSEAITF
TDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSGGAAAEGGS
GVASPAQADKAEL
//
>gi|357434240|gb|JH378123.1|:subseq(8094250,425100).[99384:275100].sp
ATGAGCCCGCGGCGGACCCTCCCGCGCCCCCTCTCGCTTTGCCTCTGCCTCTGCCTCTGC
CTGGCCGGGGCCGCGGCTCTGGGAAGTGCGCAGTCCGGGTCATGTAGGGATAAAAAGAAC
TGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCTAACACCCCTGCAGTACCAT
GTCACTCAGGAGAAAGGGACCGAAAGTGCCTTCGAAGGAGAATACACACATCACAAAGAT
CCTGGAATATATAAATGTGTTGTTTGTGGAACTCCATTGTTTAAATCAGAAACGAAATTT
GACTCCGGTTCAGGTTGGCCTTCATTCCACGATGTGATCAGTTCTGAGGCAATCACATTC
ACAGATGACTTTTCCTATGGGATGCACAGGGTGGAAACAAGCTGCTCTCAGTGTGGTGCT
CACCTTGGGCACATTTTTGATGATGGGCCTCGTCCAACTGGGAAAAGATACTGCATCAAT
TCGGCTGCCTTATCTTTCACACCTGCGGATAGCGGTGGTGCGGCCGCCGAGGGAGGCAGT
GGGGTCGCCAGCCCAGCCCAGGCAGACAAAGCAGAGCTC
//
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	match	99384	275100	395.36	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	99384	99480	0.00	+	0	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	intron	99481	149991	0.00	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	149992	150100	0.00	+	2	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	intron	150101	151698	0.00	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	151699	151776	0.00	+	1	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	intron	151777	182678	0.00	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	182679	182707	0.00	+	1	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	intron	182708	266098	0.00	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	266099	266196	0.00	+	2	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	intron	266197	274932	0.00	+	.	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
gi|357434240|gb|JH378123.1|:subseq(8094250,425100)	GeneWise	cds	274933	275100	0.00	+	0	gi|357434240|gb|JH378123.1|:subseq(8094250,425100)-genewise-prediction-1
//