genewise output
Score 1126.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000019_1.0  128 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLK 
                     ALLPGAEPAAHCYCGHQFG FAGQLGDGAAMYLGEVCTA GERWELQLK 
                     ALLPGAEPAAHCYCGHQFGHFAGQLGDGAAMYLGEVCTAAGERWELQLK 
gi|357434206|g150000 gcccgggcggctttgcctgctggccgggggatcgggtaggggctgccca 
                     cttcgcacccagaggaatgatcgatgagcctatgatgcccgaggatata 
                     gcgttcgccgccccccgcccccggggccccgcacggcggccgcggggcg 


SPP00000019_1.0  177 GAGPTPFS                          QADGRKVLRSSIREF 
                     GAGPTPFS                          QADGRKVLRSSIREF 
                     GAGPTPFS           R:R[aga]       QADGRKVLRSSIREF 
gi|357434206|g150147 gggcacttAGGTGGGCC  Intron 1   CAGAcgggcagcctaacgt 
                     gcgccctc  <2-----[150173:15419-2> acaggattgcgtgat 
                     ccgcgccc                          gcctcgcggactggc 


SPP00000019_1.0  201 LCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVAS 
                     LCSEAMFHLG+PTTRAGACVTSESTV RDVFYDGNPKYE+CTVVLR+AS 
                     LCSEAMFHLGIPTTRAGACVTSESTVARDVFYDGNPKYEKCTVVLRIAS 
gi|357434206|g154245 ctaggatccgacaacgggtgatgtaggcggttggacatgataggtcagt 
                     tggacttatgtcccgcgcgtccacctcgattaagacaaaagctttgtcc 
                     gccacgccggcccagttcccatgcgggttgcttttcataacatggtatc 


SPP00000019_1.0  250 TFI                          FGSFEIFKSADEHTGRAGPS 
                     TFI                          FGSFEIFKSADEH+GRAGPS 
                     TFI           R:R[agg]       FGSFEIFKSADEHSGRAGPS 
gi|357434206|g154392 ataAGGTAATGC  Intron 2   CAGGtgttgatatgggctgcggca 
                     ctt  <2-----[154403:15608-2> tgctattaccaaacggcgcg 
                     tca                          tactgttgcatgcagcaccc 


SPP00000019_1.0  274 VGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE          
                     VGR+DIRVQLL+YVISSFYPEIQAAHASDSVQRNAAFFRE          
                     VGRSDIRVQLLNYVISSFYPEIQAAHASDSVQRNAAFFRE          
gi|357434206|g156150 ggaagacgcccatgaatttcgacggcgagagcaaggttcg          
                     tgggatgtattaattgctacataccacgagtagaccttga          
                     gggcctcgggccccccccctgcgttcccctggatccccgg          


SPP00000019_1.0  314                        VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            VTRRTARMVAEWQCVGFCHGVLNTDN 
gi|357434206|g156270 GTCAGTG  Intron 3   CAGgaccagcagggtctggttcggcaaga 
                     <0-----[156270:15769-0>tcggccgttcagagtgtgagttacaa 
                                            gggcgggggcgggcacccccgtcccc 


SPP00000019_1.0  340 MSILGLTIDYGPFGFLD                          YDPDHV 
                     MSILGLTIDYGPFGFLD                          YDPDHV 
                     MSILGLTIDYGPFGFLD           R:R[agg]       YDPDHV 
gi|357434206|g157769 aaacgcaagtgctgtcgAGGTGAGCA  Intron 4   CAGGtgcgcg 
                     tgttgtctaagctgtta  <2-----[157822:15809-2> aacaat 
                     gccgggccctgccccgc                          cccccg 


SPP00000019_1.0  364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA 
                     CNASDNTGRYAYSKQPEVC+WNL+KLAEALQPELPLELGEAILAEEFD  
                     CNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDT 
gi|357434206|g158117 tagtgaagctgtaaccggtataccacgggcccgcccgcgggacgggtga 
                     gaccaacggacagaacatgagataatcactacatctatgacttcaatac 
                     cccacctcccaccggcggcggcggggtgggggggcgggcgccgcggtcc 


SPP00000019_1.0  413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT            
                     EFQRHYLQKMRRKLGLVQVELEEDGALVSKLL+TMHLT            
                     EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLQTMHLT            
gi|357434206|g158264 gtcactccaacaacgcgcggcgggggcgtacccaacca            
                     atagaataatggatgttatataaagcttcattactatc            
                     gcagccggggagagccggggggacggggcgcggcgcgc            


SPP00000019_1.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTFYLLSSF V+ ESPGLA 
                               G:G[ggt]        ADFTNTFYLLSSFLVDPESPGLA 
gi|357434206|g158378 GGTGAGTG  Intron 5   CAGGTggtaaatttcattcggcgtcgcg 
                      <1-----[158379:16209-1>  catcactattgctttacaccgtc 
                                               tccaccccggtccggtggagcgg 


SPP00000019_1.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFLARLMEQCASLEELRLAFRPQMDP           R:R[cgg]     
gi|357434206|g162167 gtcgacagctgtcggcacgtcccagcCGGTGAGTA  Intron 6     
                     attcgttaagcctaatgtctgcatac  <2-----[162247:163183 
                     gcgcgggggttcgggggaccgcggtc                        


SPP00000019_1.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQS+LEQLSAAE 
                         QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSQLEQLSAAE 
gi|357434206|g163181 CAGGcctaatacgctaccctgcagacggagagcgcggcctccgccaggg 
                     -2> atctttttcacacattcttgcgcgtcgatagtaaacataatgcca 
                         ggcgggggagacgggtgcgccgacccggggtggggtggagacgcg 


SPP00000019_1.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     LQSRNQ HWA WLQAY                          ARLDKDL 
                     LQSRNQDHWATWLQAY           R:R[aga]       ARLDKDL 
gi|357434206|g163320 ccaaacgctgatccgtAGGTGAGCT  Intron 7   CAGAgccgagc 
                     taggaaaagccgtaca  <2-----[163370:16344-2> cgtaaat 
                     ggcgcgccgccgtggc                          cggcgcg 


SPP00000019_1.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE     
                     EGAGDAAAWQAE VRVM A+NPKYVLRNYIAQNAIEAAERGDFSE     
                     EGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEAAERGDFSE     
gi|357434206|g163466 ggggggggtcggcgcgacgaacatgcaatagcagaggggcggttg     
                     agcgacccgacagtgttgcgacaattgaatcaactaccaggatca     
                     gttatttcggcgtgtggcccccgtgggcccagcccgtcgtgccag     


SPP00000019_1.0  616                        VRRVLKLLETPYHCEAGAATDAEATE 
                                            VRRVLKLLETPYHCEAGAAT+ EATE 
                                            VRRVLKLLETPYHCEAGAATEPEATE 
gi|357434206|g163601 GCAAGCA  Intron 8   CAGgccgcaccgactctgggggagcggag 
                     <0-----[163601:16367-0>tggttattaccaagacgcccacacca 
                                            tggaggaggctcccgagccagcgcag 


SPP00000019_1.0  642 ADGADGRQRSYSSKPPLWAAELCVT                         
                     A GA G QRSYSSKPPLWAAELCVT                         
                     ARGATGGQRSYSSKPPLWAAELCVT                         
gi|357434206|g163755 gaggaggccttaaaccctgggctga                         
                     cggccggagcaggacctgccatgtc                         
                     cagattggtccccgcacgaaagtgg                         


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|357434206|gb|JH378157.1|:subseq(6332340,313838).pep
ALLPGAEPAAHCYCGHQFGHFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRQA
DGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVARDVFYDGNPKYEKCTVVLRI
ASTFIRFGSFEIFKSADEHSGRAGPSVGRSDIRVQLLNYVISSFYPEIQAAHASDSVQRN
AAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPDHVCNAS
DNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDTEFQRHYLQKMRRKLG
LVQVELEEDGALVSKLLQTMHLTGADFTNTFYLLSSFLVDPESPGLAEFLARLMEQCASL
EELRLAFRPQMDPRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSQLEQLSAAEL
QSRNQDHWATWLQAYRARLDKDLEGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEA
AERGDFSEVRRVLKLLETPYHCEAGAATEPEATEARGATGGQRSYSSKPPLWAAELCVT
//
>gi|357434206|gb|JH378157.1|:subseq(6332340,313838).[150000:163829].sp
GCGCTCCTGCCTGGTGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGTTCGGCCAC
TTCGCCGGGCAGCTGGGGGACGGCGCCGCCATGTACCTAGGCGAGGTGTGCACGGCGGCC
GGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGGCCCACGCCCTTCTCCAGACAGGCC
GACGGTCGCAAGGTCCTGCGGTCAAGCATTCGGGAGTTCCTGTGCAGCGAAGCCATGTTC
CACCTGGGGATCCCCACCACACGGGCTGGTGCCTGCGTCACATCTGAGTCCACGGTGGCG
CGTGATGTGTTCTATGATGGTAATCCCAAATATGAAAAATGCACAGTTGTGTTGCGTATA
GCTTCCACTTTCATAAGGTTTGGATCCTTTGAGATTTTTAAGTCCGCAGATGAGCACTCA
GGGCGCGCAGGCCCCAGCGTGGGGAGGAGCGACATTCGCGTGCAGCTGCTCAACTACGTC
ATCAGCTCCTTCTACCCTGAGATCCAGGCTGCTCACGCCAGCGACAGTGTGCAGAGAAAT
GCCGCCTTCTTCCGGGAGGTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGCAGTGC
GTAGGCTTCTGCCACGGCGTGCTTAACACCGACAACATGAGCATCCTGGGGCTGACCATC
GACTATGGGCCCTTCGGCTTCCTGGACAGGTACGACCCCGACCACGTGTGCAACGCCTCA
GACAACACTGGCCGCTACGCATACAGCAAGCAGCCCGAGGTGTGCAAGTGGAACCTGCAG
AAGCTGGCTGAGGCGCTGCAGCCGGAGCTGCCCCTGGAGCTGGGCGAGGCCATCCTGGCC
GAGGAGTTTGACACCGAGTTCCAAAGGCACTACCTGCAGAAGATGCGAAGGAAACTGGGC
CTCGTGCAGGTGGAGCTGGAGGAAGACGGGGCGCTGGTGTCCAAGCTCCTGCAGACCATG
CACCTGACCGGTGCTGACTTCACAAACACCTTCTACTTGCTGAGTTCCTTCCTGGTGGAT
CCGGAGTCACCGGGCCTGGCGGAGTTCCTGGCCAGGCTGATGGAGCAGTGTGCTTCCCTG
GAGGAGCTGAGGCTAGCCTTCCGGCCCCAGATGGATCCCCGGCAGCTGTCCATGATGTTG
ATGCTGGCACAGTCAAACCCGCAGCTGTTTGCGCTCATGGGCACCCGGGCAGGCATCGCC
AGGGAGCTGGAGCGTGTGGAGCAGCAGTCTCAGCTGGAACAGCTAAGCGCGGCCGAGCTG
CAGAGCAGGAACCAGGACCACTGGGCCACCTGGCTTCAGGCGTACAGAGCCCGGCTGGAC
AAGGACCTGGAGGGTGCTGGAGATGCTGCTGCCTGGCAGGCCGAGCGTGTGCGTGTGATG
CGCGCCAGCAACCCCAAGTATGTGCTGAGGAACTACATCGCACAGAACGCCATCGAGGCT
GCCGAGCGTGGGGACTTCTCAGAGGTTCGGCGGGTACTGAAGCTACTGGAGACCCCTTAC
CACTGCGAGGCAGGGGCCGCCACAGAGCCCGAGGCCACAGAGGCCAGAGGGGCAACTGGT
GGGCAGCGTTCCTACAGCAGCAAGCCCCCACTCTGGGCAGCAGAACTGTGTGTGACG
//
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	match	150000	163829	1126.87	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	150000	150172	0.00	+	0	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	150173	154198	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	154199	154402	0.00	+	1	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	154403	156088	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	156089	156269	0.00	+	1	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	156270	157690	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	157691	157821	0.00	+	0	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	157822	158097	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	158098	158378	0.00	+	1	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	158379	162095	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	162096	162246	0.00	+	2	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	162247	163183	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	163184	163369	0.00	+	1	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	163370	163443	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	163444	163600	0.00	+	1	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	intron	163601	163676	0.00	+	.	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	GeneWise	cds	163677	163829	0.00	+	0	gi|357434206|gb|JH378157.1|:subseq(6332340,313838)-genewise-prediction-1
//