genewise output
Score 202.24 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000014_1.0    1 MAPRGRKRKAEAAVVAV--AEKREKLANGGEGMEEATVVIEH        
                     MA RGRKRKAEAAVVA    EKREKLANGGEG+EEAT+VIEH        
                     MASRGRKRKAEAAVVA!PRSEKREKLANGGEGVEEATIVIEH        
gi|357434258|g149779 agtcgaacaggggggg4caagacgacgaggggggggaagagc        
                     tccgggagacaccttc cggaagaatcaggagtaacctttaa        
                     gtccgggggtgcggcc gacggaggggccgaaggggctttgt        


SPP00000014_1.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
gi|357434258|g149906 TGGTGAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[149908:14999-2> cgggtaggaccctgactgtacca 
                                               tcacttgaccgcgcgggcggcaa 


SPP00000014_1.0   65 LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNP KPRRGSFEVTLLRPDGS                         
                     LPVKVNPAKPRRGSFEVTLLRPDGS          S:S[agt]       
gi|357434258|g150069 ccgagacgaccagatggaccccggaAGTGAGTG  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[150145:150292   
                     taaggcacgcggcccgggggcgccc                         


SPP00000014_1.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
gi|357434258|g150290 CAGGTggctagaaagcccacatcgccgggggtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcgcacactgtagggaggggcgg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>gi|357434258|gb|JH378105.1|:subseq(51682336,300390).pep
MASRGRKRKAEAAVVAXPRSEKREKLANGGEGVEEATIVIEHCTSXRVYGRNAAALSQAL
RLEAPELPVKVNPAKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELK
KYLS
//
>gi|357434258|gb|JH378105.1|:subseq(51682336,300390).[149779:149826].sp
ATGGCTTCCCGCGGGAGGAAGCGGAAGGCTGAGGCCGCGGTGGTCGCC
>gi|357434258|gb|JH378105.1|:subseq(51682336,300390).[149831:150390].sp
CCGAGAAGCGAGAAGCGAGAGAAGCTGGCGAACGGCGGGGAAGGAGTGGAGGAGGCGACC
ATTGTTATTGAGCATTGCACTAGCTGACGCGTTTATGGGCGAAACGCCGCGGCCCTGAGC
CAGGCGCTGCGCCTGGAGGCCCCAGAACTTCCAGTAAAGGTGAACCCAGCCAAGCCCCGG
AGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACT
GGGATTAAGAAGGGGCCCCCGCGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAA
GAGTTGAAGAAGTACCTGTCG
//
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	match	149779	149826	15.07	+	.	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-1
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	cds	149779	149826	0.00	+	0	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-1
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	match	149831	150390	187.17	+	.	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	cds	149831	149907	0.00	+	0	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	intron	149908	149998	0.00	+	.	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	cds	149999	150144	0.00	+	1	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	intron	150145	150292	0.00	+	.	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	GeneWise	cds	150293	150390	0.00	+	2	gi|357434258|gb|JH378105.1|:subseq(51682336,300390)-genewise-prediction-2
//