genewise output
Score 442.71 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000006_1.0    1 MARLLQASCLLSLLLAGFVSQSRGQEKSK                     
                     MARLLQA CLLSLLLAGFV QSRGQ KSK                     
                     MARLLQACCLLSLLLAGFVPQSRGQVKSK                     
gi|357434197|g145347 agccccgttcctcccggtgccacgcgataGTGAGTG  Intron 1    
                     tcgttacggttctttcgttcagggataca<0-----[145434:150002
                     gcgggggccgccgcgccccggcgaagggg                     


SPP00000006_1.0   30    MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                        +DCHGG+SGTIYEYGALTI+GEEY+PFKQ+AGKY+LFVNVASYXGL 
                        VDCHGGMSGTIYEYGALTINGEEYVPFKQFAGKYLLFVNVASYXGL 
gi|357434197|g150000 CAGggtcggaagaatgtggcaaagggtgctactggatcctgaggattgc 
                     -0>tagaggtggctaaagctctagaaatctaatcgaattttatcgaggt 
                        gccttcgcccttgcacccctgggtcccggttcaccctccgcccacg 


SPP00000006_1.0   76 TGQYI                          LNALQEELAPFGLVILGF 
                     TGQYI                          LNALQEELAPFGLV+LGF 
                     TGQYI          E:E[gaa]        LNALQEELAPFGLVVLGF 
gi|357434197|g150141 agctaGGTAAGAG  Intron 2   CAGAAcagccggcgctgcggcgt 
                     cgaat <1-----[150157:15157-1>  tactaaatcctgttttgt 
                     gcgct                          gtaagagtcattgctgct 


SPP00000006_1.0  100 PCNQFGKQEPGENSEILPTL                          YVR 
                     PCNQFGKQEPGENSEILP+L                          YVR 
                     PCNQFGKQEPGENSEILPSL           K:K[aag]       YVR 
gi|357434197|g151632 ctactgacgcggatgaccacAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaacattcgt  <2-----[151694:15210-2> atg 
                     cccataagaaagcggtcccc                          tca 


SPP00000006_1.0  124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNG+KEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGDKEQKFYTFLK                    
gi|357434197|g152117 cgggtgcatcctgagggaggagcattatca                    
                     cgggttcatattaagatagaaaaatactta                    
                     atgcccctcggtgagtgtataggacctcag                    


SPP00000006_1.0  154                        NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSCPPTSEL+GTSDRLFWEPMKVHDI 
                                            NSCPPTSELVGTSDRLFWEPMKVHDI 
gi|357434197|g152207 GTGAGTG  Intron 4   TAGattccatgcggatgccttgcaagcga 
                     <0-----[152207:15259-0>acgccccattgccagttgactataat 
                                            ccttacggcgtatcgccgacggctcc 


SPP00000006_1.0  180 RWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR-RQAA        
                     RWNFEKFLVGPDGIP+MRWHHRTTVSNVKMDIL YMR RQAA        
                     RWNFEKFLVGPDGIPVMRWHHRTTVSNVKMDILLYMRHRQAA        
gi|357434197|g152676 ctatgatcggcggacgactcccaagaagaagacttaacccgg        
                     ggataatttgcagtcttggaagcctgatatatttatgagacc        
                     cgctggcgggattaccgcgccgcgccctggtcgacggcggac        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|357434197|gb|JH378166.1|:subseq(9665905,302819).pep
MARLLQACCLLSLLLAGFVPQSRGQVKSKVDCHGGMSGTIYEYGALTINGEEYVPFKQFA
GKYLLFVNVASYXGLTGQYIELNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLK
YVRPGGGFVPNFQLFEKGDVNGDKEQKFYTFLKNSCPPTSELVGTSDRLFWEPMKVHDIR
WNFEKFLVGPDGIPVMRWHHRTTVSNVKMDILLYMRHRQAA
//
>gi|357434197|gb|JH378166.1|:subseq(9665905,302819).[145347:152801].sp
ATGGCCCGGCTGCTGCAGGCGTGCTGCCTGCTCTCCCTGCTCCTGGCCGGCTTCGTCCCG
CAGAGCCGGGGACAAGTGAAGTCGAAGGTGGACTGCCATGGTGGCATGAGCGGCACCATT
TATGAGTACGGAGCCCTCACCATCAATGGGGAGGAGTATGTCCCCTTCAAGCAGTTTGCT
GGCAAATACCTCCTCTTTGTCAACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACATT
GAACTGAATGCACTACAGGAAGAGCTTGCCCCATTTGGTCTGGTCGTTCTGGGCTTTCCC
TGCAACCAATTTGGAAAACAGGAACCAGGAGAGAACTCGGAGATTCTCCCCAGCCTCAAG
TATGTCCGACCAGGTGGGGGCTTCGTCCCCAATTTCCAGCTGTTTGAGAAAGGGGATGTG
AATGGAGATAAAGAGCAGAAATTCTACACTTTCCTAAAGAACTCCTGTCCTCCAACCTCG
GAGCTCGTGGGTACATCTGACCGGCTCTTCTGGGAACCCATGAAGGTCCATGACATCCGC
TGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTATACCCGTCATGCGCTGGCACCAC
CGGACCACGGTCAGCAACGTTAAGATGGATATCCTGTTATACATGAGGCACCGGCAGGCA
GCC
//
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	match	145347	152801	442.71	+	.	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	cds	145347	145433	0.00	+	0	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	intron	145434	150002	0.00	+	.	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	cds	150003	150156	0.00	+	0	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	intron	150157	151575	0.00	+	.	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	cds	151576	151693	0.00	+	2	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	intron	151694	152106	0.00	+	.	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	cds	152107	152206	0.00	+	1	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	intron	152207	152597	0.00	+	.	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	GeneWise	cds	152598	152801	0.00	+	0	gi|357434197|gb|JH378166.1|:subseq(9665905,302819)-genewise-prediction-1
//