Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000033_1.0.fa -t ./exonerate/SPP00000033_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434222|gb|JH378141.1|:subseq(9896806,301226) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00037, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2146
   Query range: 0 -> 448
  Target range: 149915 -> 151256

      1 : MetAlaGluAlaSerAlaThrGlyAlaCysGlyGlu<-><-><->AlaMetAlaAlaA :     17
          ||||||||||||||||||||||||||||||||||||         |||||||||||||
          MetAlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMetAlaAlaMetAlaAlaA
 149916 : ATGGCGGAAGCCTCGGCGACCGGCGCCTGCGGAGAGGCGATGGCGGCGATGGCAGCTG : 149973

     18 : laGluGlySerSerGlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrAr :     36
          |||||||||||||||||||||||||||||||||||||||||!:!||||||||||||||
          laGluGlySerSerGlyProAlaGlyLeuThrLeuGlyArgAsnPheSerAsnTyrAr
 149974 : CGGAAGGCTCCTCGGGCCCTGCGGGCTTGACTCTGGGCCGGAACTTCTCCAACTACCG : 150030

     37 : gProPheGluProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSer :     55
          ||||||||||||||||||||||||||||||| !!||||||||||||||||||||||||
          gProPheGluProGlnAlaLeuGlyLeuSerAlaSerTrpArgLeuThrGlyPheSer
 150031 : GCCCTTCGAGCCCCAGGCGTTGGGTCTCAGCGCGAGCTGGCGGCTGACGGGCTTCTCC : 150087

     56 : GlyMetLysGlyUnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaG :     75
          ||||||||||||   |||||||||||||||||||||.!!|||||||||||||||||||
          GlyMetLysGly***GlyCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaG
 150088 : GGCATGAAGGGCTGAGGCTGCAAGGTCCCGCAGGAGACGCTGCTCAAACTCCTGGCGG : 150147

     76 : lyLeuThrArgProAspValArgProProLeuGlyArgGlyLeuValGlyGlyGlnGl :     94
          ||||||||||||||||||||||||||||||||||| !!||||||! !|||||||||||
          lyLeuThrArgProAspValArgProProLeuGlyGlyGlyLeuGluGlyGlyGlnGl
 150148 : GACTGACGCGGCCGGACGTGCGGCCCCCACTGGGCGGGGGCCTGGAGGGCGGTCAGGA : 150204

     95 : uGluAlaSerGlnGluAlaGlyLeuProAlaGlyAlaGlyProSerProThrPhePro :    113
          ||||||||||||||||            .!!|||||||||||||||||||||||||||
          uGluAlaSerGlnGlu------------ThrGlyAlaGlyProSerProThrPhePro
 150205 : AGAGGCGTCGCAGGAA------------ACCGGAGCGGGCCCCAGCCCCACTTTTCCA : 150249

    114 : AlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerL :    133
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerL
 150250 : GCCCTGGGCATCGGGATGGACTCTTGCGTCATCCCCCTGAGGCATGGGGGCCTGTCGC : 150309

    134 : euValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyAr :    152
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyAr
 150310 : TGGTGCAGACTACAGACTTCTTTTACCCCTTGGTGGAAGATCCCTACATGATGGGGCG : 150366

    153 : gIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAsp :    171
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          gIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAsp
 150367 : CATAGCTTGTGCCAACGTGCTGAGTGATCTCTACGCCATGGGCATTACTGAGTGTGAC : 150423

    172 : AsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysV :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysV
 150424 : AACATGTTGATGTTGCTCAGCGTCAGCCAGAGTATGAGTGAGGAGGAACGCGAAAAGG : 150483

    192 : alThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaVa :    210
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaVa
 150484 : TAACGCCACTCATGGTCAAAGGCTTTCGGGATGCGGCTGAGGAAGGAGGGACTGCAGT : 150540

    211 : lThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrVal :    229
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrVal
 150541 : GACCGGTGGGCAAACTGTGGTCAACCCTTGGATTATAATCGGTGGAGTTGCCACTGTG : 150597

    230 : ValCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuV :    249
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuV
 150598 : GTATGCCAGCCAAATGAATTCATAATGCCCGACAGCGCGGTGGTTGGGGATGTGTTGG : 150657

    250 : alLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAs :    268
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAs
 150658 : TGTTAACCAAACCGTTAGGAACCCAGGTTGCTGTCAATGCCCACCAATGGCTCGATAA : 150714

    269 : nProGluArgTrpAsnLysValLysMetValValSerArgGluGluValGluLeuAla :    287
          |||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||
          nProGluArgTrpAsnLysValLysMetValIleSerArgGluGluValGluLeuAla
 150715 : TCCTGAAAGATGGAATAAAGTAAAGATGGTGATCTCCAGAGAAGAGGTGGAGCTGGCG : 150771

    288 : TyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetH :    307
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetH
 150772 : TATCAGGAAGCCATGTTCAATATGGCTACCCTCAACAGAACTGCTGCAGGTTTAATGC : 150831

    308 : isThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSe :    326
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          isThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSe
 150832 : ACACATTTAATGCCCATGCGGCCACAGATATCACAGGCTTTGGCATTTTAGGACACTC : 150888

    327 : rGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuPro :    345
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuPro
 150889 : CCAGAACCTTGCGAAACAACAAAGAAACGAAGTGTCCTTTGTTATTCATAATCTGCCA : 150945

    346 : IleIleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnG :    365
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||!:!|
          IleIleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuArgG
 150946 : ATAATTGCCAAGATGGCTGCCGTCAGCAAGGCCAGTGGACGCTTTGGGCTTCTTCGGG : 151005

    366 : lyThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAl :    384
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAl
 151006 : GAACCTCGGCTGAAACCTCTGGGGGATTACTGATTTGTCTGCCTAGAGAACAGGCGGC : 151062

    385 : aArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIle :    403
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIle
 151063 : TCGCTTTTGTTCTGAAATCAAATCCTCCAAGTATGGAGAGGGTCACCAAGCGTGGATC : 151119

    404 : ValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValI :    423
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValI
 151120 : GTTGGCATTGTGGAAAAGGGAAACCGAACGGCCCGGATCATTGACAAGCCTCGAGTTA : 151179

    424 : leGluValLeuProArgGlyAlaThrAlaAlaValLeuAlaProAspSerSerAsnAl :    442
          ||||||||||||||||||||||||||||||||!.!||||||||||||!:!||||||||
          leGluValLeuProArgGlyAlaThrAlaAlaAlaLeuAlaProAspAsnSerAsnAl
 151180 : TTGAAGTCCTACCTCGTGGGGCCACAGCTGCTGCCCTTGCTCCTGACAATTCAAATGC : 151236

    443 : aSerSerGluProSerSer :    448
          |||||||||||||!!!|||
          aSerSerGluProCysSer
 151237 : CTCCTCTGAGCCTTGCTCG : 151256

vulgar: SPP00000033_1.0 0 448 . gi|357434222|gb|JH378141.1|:subseq(9896806,301226) 149915 151256 + 2146 M 12 36 G 0 9 M 87 261 G 4 0 M 345 1035
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434222|gb|JH378141.1|:subseq(9896806,301226)	exonerate:protein2genome:local	gene	149916	151256	2146	+	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
gi|357434222|gb|JH378141.1|:subseq(9896806,301226)	exonerate:protein2genome:local	cds	149916	151256	.	+	.	
gi|357434222|gb|JH378141.1|:subseq(9896806,301226)	exonerate:protein2genome:local	exon	149916	151256	.	+	.	insertions 9 ; deletions 4
gi|357434222|gb|JH378141.1|:subseq(9896806,301226)	exonerate:protein2genome:local	similarity	149916	151256	2146	+	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 149916 1 36 ; Align 149961 13 261 ; Align 150222 104 1035
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis