Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000030_1.0.fa -t ./exonerate/SPP00000030_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo sapiens # Complete
        Target: gi|357434131|gb|JH378232.1|:subseq(2877653,300230) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00128, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 336
   Query range: 0 -> 87
  Target range: 147827 -> 150278

      1 : MetAlaLeuAlaValArgValValTyr{Cy}  >>>> Target Intron 1 >>>> :     10
          |||||||||.!!|||||||||||||||{||}           1925 bp         
          MetAlaLeuThrValArgValValTyr{Cy}++                         
 147828 : ATGGCTCTCACGGTCCGAGTCGTTTAT{TG}gt......................... : 147859

     11 :   {s}GlyAlaUnkGlyTyrLysSerLysTyrLeuGlnLeuLysLysLysLeuGluAs :     28
            {|} !!! !     !  ! ! ! !:!!|||||||||||||||||||||||||||||
          -+{s}ArgAspLeuProProHisPheGlnTyrLeuGlnLeuLysLysLysLeuGluAs
 147860 : tg{C}CGTGACCTCCCACCCCATTTTCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGA : 149834

     29 : pGluPheProGlyArgLeuAspIle  >>>> Target Intron 2 >>>>  CysG :     38
          |||||||||||||||||||||||||            163 bp           ! !|
          pGluPheProGlyArgLeuAspIle++                         ++SerG
 149835 : TGAGTTCCCCGGCCGCCTGGACATCgt.........................agTCCG : 150027

     39 : lyGluGlyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuIl :     57
          ||||||||||||||||||||||||||||||||||||||! !|||||||||||||||||
          lyGluGlyThrProGlnAlaThrGlyPhePheGluValThrValAlaGlyLysLeuIl
 150028 : GCGAGGGAACTCCCCAGGCCACCGGGTTCTTCGAAGTAACGGTAGCTGGGAAGTTGAT : 150084

     58 : eHisSerLysLys  >>>> Target Intron 3 >>>>  LysGlyAspGlyTyrV :     67
          |||||||||||||            102 bp           ||||||||||||||||
          eHisSerLysLys++                         ++LysGlyAspGlyTyrV
 150085 : TCACTCTAAGAAGgt.........................agAAAGGCGATGGCTATG : 150216

     68 : alAspThrGluSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGl :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alAspThrGluSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGl
 150217 : TGGACACGGAAAGCAAGTTTCTGAAGCTGGTGGCCGCCATCAAAGCTGCCTTGGCTCA : 150273

     87 : nGly :     87
          ||||
          nGly
 150274 : GGGC : 150278

vulgar: SPP00000030_1.0 0 87 . gi|357434131|gb|JH378232.1|:subseq(2877653,300230) 147827 150278 + 336 M 9 27 S 0 2 5 0 2 I 0 1921 3 0 2 S 1 1 M 26 78 5 0 2 I 0 159 3 0 2 M 25 75 5 0 2 I 0 98 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	gene	147828	150278	336	+	.	gene_id 1 ; sequence SPP00000030_1.0 ; gene_orientation +
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	cds	147828	147856	.	+	.	
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	exon	147828	147856	.	+	.	insertions 0 ; deletions 0
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice5	147857	147858	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	intron	147857	149781	.	+	.	intron_id 1
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice3	149780	149781	.	+	.	intron_id 0 ; splice_site "TG"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	cds	149782	149860	.	+	.	
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	exon	149782	149860	.	+	.	insertions 0 ; deletions 0
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice5	149861	149862	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	intron	149861	150023	.	+	.	intron_id 2
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice3	150022	150023	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	cds	150024	150098	.	+	.	
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	exon	150024	150098	.	+	.	insertions 0 ; deletions 0
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice5	150099	150100	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	intron	150099	150200	.	+	.	intron_id 3
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	splice3	150199	150200	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	cds	150201	150278	.	+	.	
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	exon	150201	150278	.	+	.	insertions 0 ; deletions 0
gi|357434131|gb|JH378232.1|:subseq(2877653,300230)	exonerate:protein2genome:local	similarity	147828	150278	336	+	.	alignment_id 1 ; Query SPP00000030_1.0 ; Align 147828 1 27 ; Align 149783 11 78 ; Align 150024 37 75 ; Align 150201 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis