Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000021_1.0.fa -t ./exonerate/SPP00000021_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1 (SelR1) # Homo sapiens # Complete
        Target: gi|357434229|gb|JH378134.1|:subseq(15886669,302899) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00030, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 614
   Query range: 0 -> 116
  Target range: 149999 -> 155529

      1 : MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluPro{G}  :     19
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||{|} 
          MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluPro{G}+
 150000 : ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGGTTTTCCAGAATCACTTTGAGCCG{G}g : 150055

     20 :  >>>> Target Intron 1 >>>>  {ly}ValTyrValCysAlaLysCysGlyTy :     28
                    2178 bp           {||}:!!|||||||||||||||||||||||
          +                         ++{ly}IleTyrValCysAlaLysCysGlyTy
 150056 : t.........................ag{GC}ATTTACGTTTGTGCCAAGTGTGGCTA : 152259

     29 : rGluLeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProAlaPheThr :     47
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rGluLeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProAlaPheThr
 152260 : TGAGCTGTTCTCCAGCCGCTCAAAGTACGCACACTCATCCCCATGGCCGGCGTTCACT : 152316

     48 : GluThrIleHisAlaAspSerValAlaLysArgProGluHisAsnArgSerGluAlaL :     67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluThrIleHisAlaAspSerValAlaLysArgProGluHisAsnArgSerGluAlaL
 152317 : GAGACCATTCACGCCGACAGCGTGGCCAAGCGTCCGGAGCACAATCGATCTGAAGCCT : 152376

     68 : euLys  >>>> Target Intron 2 >>>>  ValSerCysGlyLysCysGlyAsn :     76
          |||||            377 bp           ||||||||||||||||||||||||
          euLys++                         ++ValSerCysGlyLysCysGlyAsn
 152377 : TGAAGgt.........................agGTGTCCTGTGGCAAGTGTGGCAAC : 152780

     77 : GlyLeuGlyHisGluPheLeuAsnAspGlyProLysProGlyGlnSerArgPheUnkI :     96
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
          GlyLeuGlyHisGluPheLeuAsnAspGlyProLysProGlyGlnSerArgPhe***I
 152781 : GGGTTGGGCCATGAGTTCCTGAACGACGGCCCCAAGCCGGGGCAGTCCCGATTCTGAA : 152840

     97 : lePheSerSerSerLeuLysPheValProLys{G}  >>>> Target Intron 3  :    107
          ||||||||||||||||||||||||||||||||{|}           2627 bp     
          lePheSerSerSerLeuLysPheValProLys{G}++                     
 152841 : TATTCAGTAGCTCGCTGAAGTTTGTCCCTAAA{G}gt..................... : 152876

    108 : >>>>  {ly}LysGluThrSerAlaSerGlnGlyHis :    116
                {||}|||||||||||||||||||||||||||
              ++{ly}LysGluThrSerAlaSerGlnGlyHis
 152877 : ....ag{GC}AAAGAAACTTCTGCGTCCCAGGGGCAC : 155529

vulgar: SPP00000021_1.0 0 116 . gi|357434229|gb|JH378134.1|:subseq(15886669,302899) 149999 155529 + 614 M 18 54 S 0 1 5 0 2 I 0 2174 3 0 2 S 1 2 M 49 147 5 0 2 I 0 373 3 0 2 M 38 114 S 0 1 5 0 2 I 0 2623 3 0 2 S 1 2 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	gene	150000	155529	614	+	.	gene_id 1 ; sequence SPP00000021_1.0 ; gene_orientation +
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	cds	150000	150054	.	+	.	
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	exon	150000	150054	.	+	.	insertions 0 ; deletions 0
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice5	150055	150056	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	intron	150055	152232	.	+	.	intron_id 1
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice3	152231	152232	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	cds	152233	152381	.	+	.	
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	exon	152233	152381	.	+	.	insertions 0 ; deletions 0
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice5	152382	152383	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	intron	152382	152758	.	+	.	intron_id 2
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice3	152757	152758	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	cds	152759	152873	.	+	.	
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	exon	152759	152873	.	+	.	insertions 0 ; deletions 0
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice5	152874	152875	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	intron	152874	155500	.	+	.	intron_id 3
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	splice3	155499	155500	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	cds	155501	155529	.	+	.	
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	exon	155501	155529	.	+	.	insertions 0 ; deletions 0
gi|357434229|gb|JH378134.1|:subseq(15886669,302899)	exonerate:protein2genome:local	similarity	150000	155529	614	+	.	alignment_id 1 ; Query SPP00000021_1.0 ; Align 150000 1 54 ; Align 152235 20 147 ; Align 152759 69 114 ; Align 155503 108 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis