Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000021_1.0.fa -t ./exonerate/SPP00000021_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1 (SelR1) # Homo sapiens # Complete
        Target: gi|357434082|gb|JH378281.1|:subseq(258676,300342) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00177, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 336
   Query range: 0 -> 116
  Target range: 150348 -> 149999

      1 : MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluProGlyV :     20
          :!!! !|||  !||||||||||||||||||||||||||||||||||||||||||||||
          LeuLeuPheHisSerPhePheGlyGlyGluValPheGlnAsnHisPheGluProGlyV
 150348 : CTGTTGTTCCACAGCTTCTTCGGGGGTGAGGTTTTCCAGAATCACTTTGAGCCAGGCG : 150291

     21 : alTyrValCys-AlaLysCysGlyTyrGluLeuPheSerSerArgSerLysTyrAlaH :     39
          ||! !!.!|||#   |||||||||:!!||||||.!!||||||! !||| !!|||.!!|
          alCysAlaCys#---LysCysGlyHisGluLeuIleSerSerLeuSer***TyrThrH
 150290 : TCTGTGCGTGCC---AAGTGTGGCCACGAGCTGATCTCCAGCCTCTCATAGTACACAC : 150236

     40 : isSerSerProTrpProAlaPheThrGluThrIleHisAlaAspSerValAlaLysAr :     58
          |||||! !||||||  !!.!||||||:!!|||:!!|||:!!||||||||||||||| !
          isSerPheProTrpTrpValPheThrLysThrValHisSerAspSerValAlaLysCy
 150235 : ACTCATTCCCCTGGTGGGTGTTCACCAAGACCGTCCACTCTGACAGCGTGGCCAAGTG : 150179

     59 : gProGluHisAsnArgSerGluAlaLeuLysValSerCysGlyLysCysGlyAsnGly :     77
          !! !||||||!:!!.! !!|||||||||||||||||||||! !||||||||||||! !
          sLeuGluHisSerHisProGluAlaLeuLysValSerCysValLysCysGlyAsnVal
 150178 : CCTGGAGCACAGTCATCCCGAAGCCTTGAAGGTGTCCTGTGTCAAGTGTGGCAATGTG : 150122

     78 : LeuGlyHisGluPheLeuAsnAspGlyProLysProGlyGlnSerArgPheUnk<->I :     96
          |||.!!! !||||||||||||!  !.!|||!..  !|||!!. !!  !! !      |
          LeuSerLeuGluPheLeuAsnValAlaProSerCysGlyHisArgAspSerGlu***I
 150121 : TTGAGCCTCGAGTTCCTGAACGTGGCCCCAAGCTGTGGCCATCGGGATTCTGAGTGAA : 150062

     97 : lePheSerSerSerLeuLysPheValProLysGlyLysGluThrSerAlaSerGlnGl :    115
          ||||||||||||||||||||||||||||||||||||||||||||! !||||||:!!||
          lePheSerSerSerLeuLysPheValProLysGlyLysGluThrPheAlaSerLysGl
 150061 : TATTCAGCAGCTCACTGAAGTTTGTCCCGAAAGGCAAAGAAACTTTTGCCTCCAAGGG : 150005

    116 : yHis :    116
          ||||
          yHis
 150004 : CCAC : 150000

vulgar: SPP00000021_1.0 0 116 . gi|357434082|gb|JH378281.1|:subseq(258676,300342) 150348 149999 - 336 M 23 69 F 0 1 G 1 0 M 71 213 G 0 3 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434082|gb|JH378281.1|:subseq(258676,300342)	exonerate:protein2genome:local	gene	150000	150348	336	-	.	gene_id 1 ; sequence SPP00000021_1.0 ; gene_orientation .
gi|357434082|gb|JH378281.1|:subseq(258676,300342)	exonerate:protein2genome:local	cds	150000	150348	.	-	.	
gi|357434082|gb|JH378281.1|:subseq(258676,300342)	exonerate:protein2genome:local	exon	150000	150348	.	-	.	insertions 3 ; deletions 1 ; frameshifts 1
gi|357434082|gb|JH378281.1|:subseq(258676,300342)	exonerate:protein2genome:local	similarity	150000	150348	336	-	.	alignment_id 1 ; Query SPP00000021_1.0 ; Align 150349 1 69 ; Align 150279 25 213 ; Align 150063 96 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis