Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000019_1.0.fa -t ./exonerate/SPP00000019_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo sapiens # Complete
        Target: gi|357434206|gb|JH378157.1|:subseq(6332340,313838) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00053, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2623
   Query range: 20 -> 669
  Target range: 131060 -> 163838

     21 : GlyArgCysSerProSerProAlaProArgSerThrLeuSerGlyAlaAlaMetGluP :     40
          ||| !!!  ||||||.!!|||||||||! !..!  !|||||||||  !!.!  !:!! 
          GlyGlyLeuSerProGlyProAlaProThrAspGlnLeuSerGlyLysGlyGlyGlnG
 131061 : GGAGGGTTGAGCCCTGGGCCTGCACCCACAGACCAGCTCAGTGGCAAGGGTGGGCAGG : 131118

     41 : roAlaProArgTrpLeuAlaGlyLeuArgPheAspAsnArgAlaLeuArgAlaLeuPr :     59
           !!.! !!  !  !  !.!!  !  !! !.!.! !:::  !|||  !! !|||:!!  
          lyValAlaAlaGluGlyThrGlnGlyMetMetAlaSerValAlaAlaLeuAlaMetGl
 131119 : GCGTGGCAGCTGAGGGGACCCAAGGGATGATGGCCTCGGTGGCAGCGCTTGCCATGGG : 131175

     60 : oValGluAlaProProProGlyProGluGlyAlaProSerAlaProArgProValPro :     78
          !|||   ||| !!! !! !  !  !  !|||:!!! !  ! !!  !  !|||  !|||
          yValLeuAlaAlaLeuGlnProGlyLeuGlySerHisLeuProGlySerProTyrPro
 131176 : TGTTCTTGCTGCTCTCCAGCCGGGGCTGGGGTCCCACCTCCCGGGCTCTCCTTACCCT : 131232

     79 : GlyAlaCysPheThrArgValGlnProThrProLeuArgGlnProArgLeuValAlaL :     98
            !.!!|||  !  !! !  !  !|||..!! !|||  !     !|||! !!.!  !|
          HisThrCysThrCysLeuProAlaProValLeuLeuAlaAlaTrpArgProAlaTrpL
 131233 : CACACGTGCACCTGCCTGCCTGCACCTGTCCTCCTTGCTGCCTGGCGTCCTGCATGGT : 131292

     99 : euSerGluProAlaLeuAlaLeuLeuGlyLeuGlyAlaProProAlaArg{Gl}  >> :    115
          |||||  !  !!.!! !..!! !:!!! !||||||  !  !! !:!! !!{  }    
          euSerLeuGluGlyArgCysProIleValLeuGlyTyrSerArgSerGly{Un}++  
 131293 : TGAGCCTAGAGGGGCGATGTCCTATAGTCCTTGGGTACAGCCGATCTGGG{TG}gt.. : 131347

    116 : >> Target Intron 1 >>>>  {u}AlaGluAlaGluAlaAlaLeuPhePheSer :    125
                 18618 bp          { }...   ...   ......         ...
                                 --{k}UnkUnkUnkUnkUnkUnkUnkUnkUnkUnk
 131348 : .......................nn{N}NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : 149991

    126 : GlyAsnAlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnP :    145
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
          UnkUnkAlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnP
 149992 : NNNNNNGCGCTCCTGCCTGGTGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGT : 150051

    146 : heGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCy :    164
          |||||!!.||||||||||||||||||||||||||||||||||||||||||||||||||
          heGlyHisPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCy
 150052 : TCGGCCACTTCGCCGGGCAGCTGGGGGACGGCGCCGCCATGTACCTAGGCGAGGTGTG : 150108

    165 : sThrAlaThrGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPhe :    183
          |||||||.!!||||||||||||||||||||||||||||||||||||||||||||||||
          sThrAlaAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPhe
 150109 : CACGGCGGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGGCCCACGCCCTTC : 150165

    184 : Ser{Ar}  >>>> Target Intron 2 >>>>  {g}GlnAlaAspGlyArgLysV :    192
          |||{||}           4026 bp           {|}|||||||||||||||||||
          Ser{Ar}++                         ++{g}GlnAlaAspGlyArgLysV
 150166 : TCC{AG}gt.........................ag{A}CAGGCCGACGGTCGCAAGG : 154218

    193 : alLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyVa :    211
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!
          alLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyIl
 154219 : TCCTGCGGTCAAGCATTCGGGAGTTCCTGTGCAGCGAAGCCATGTTCCACCTGGGGAT : 154275

    212 : lProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValValArgAspVal :    230
          !|||||||||||||||||||||||||||||||||||||||||||||!.!|||||||||
          eProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValAlaArgAspVal
 154276 : CCCCACCACACGGGCTGGTGCCTGCGTCACATCTGAGTCCACGGTGGCGCGTGATGTG : 154332

    231 : PheTyrAspGlyAsnProLysTyrGluGlnCysThrValValLeuArgValAlaSerT :    250
          |||||||||||||||||||||||||||:!!||||||||||||||||||:!!|||||||
          PheTyrAspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerT
 154333 : TTCTATGATGGTAATCCCAAATATGAAAAATGCACAGTTGTGTTGCGTATAGCTTCCA : 154392

    251 : hrPheIle{Ar}  >>>> Target Intron 3 >>>>  {g}PheGlySerPheGl :    258
          ||||||||{||}           1686 bp           {|}||||||||||||||
          hrPheIle{Ar}++                         ++{g}PheGlySerPheGl
 154393 : CTTTCATA{AG}gt.........................ag{G}TTTGGATCCTTTGA : 156102

    259 : uIlePheLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArgAsn :    277
          |||||||||||||||||||||||||:!!|||||||||||||||||||||||||||!:!
          uIlePheLysSerAlaAspGluHisSerGlyArgAlaGlyProSerValGlyArgSer
 156103 : GATTTTTAAGTCCGCAGATGAGCACTCAGGGCGCGCAGGCCCCAGCGTGGGGAGGAGC : 156159

    278 : AspIleArgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGlnA :    297
          |||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||
          AspIleArgValGlnLeuLeuAsnTyrValIleSerSerPheTyrProGluIleGlnA
 156160 : GACATTCGCGTGCAGCTGCTCAACTACGTCATCAGCTCCTTCTACCCTGAGATCCAGG : 156219

    298 : laAlaHisAlaSerAspSerValGlnArgAsnAlaAlaPhePheArgGlu  >>>> T :    314
          ||||||||||||||||||||||||||||||||||||||||||||||||||        
          laAlaHisAlaSerAspSerValGlnArgAsnAlaAlaPhePheArgGlu++      
 156220 : CTGCTCACGCCAGCGACAGTGTGCAGAGAAATGCCGCCTTCTTCCGGGAGgt...... : 156272

    315 : arget Intron 4 >>>>  ValThrArgArgThrAlaArgMetValAlaGluTrpG :    326
             1421 bp           |||||||||||||||||||||||||||||||||||||
                             ++ValThrArgArgThrAlaArgMetValAlaGluTrpG
 156273 : ...................agGTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGC : 157727

    327 : lnCysValGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLe :    345
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lnCysValGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLe
 157728 : AGTGCGTAGGCTTCTGCCACGGCGTGCTTAACACCGACAACATGAGCATCCTGGGGCT : 157784

    346 : uThrIleAspTyrGlyProPheGlyPheLeuAsp{Ar}  >>>> Target Intron :    357
          ||||||||||||||||||||||||||||||||||{||}            276 bp  
          uThrIleAspTyrGlyProPheGlyPheLeuAsp{Ar}++                  
 157785 : GACCATCGACTATGGGCCCTTCGGCTTCCTGGAC{AG}gt.................. : 157824

    358 :  5 >>>>  {g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgT :    373
                   {|}||||||||||||||||||||||||||||||||||||||||||||||
                 ++{g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgT
 157825 : .......ag{G}TACGACCCCGACCACGTGTGCAACGCCTCAGACAACACTGGCCGCT : 158144

    374 : yrAlaTyrSerLysGlnProGluValCysArgTrpAsnLeuArgLysLeuAlaGluAl :    392
          |||||||||||||||||||||||||||||!:!|||||||||!:!||||||||||||||
          yrAlaTyrSerLysGlnProGluValCysLysTrpAsnLeuGlnLysLeuAlaGluAl
 158145 : ACGCATACAGCAAGCAGCCCGAGGTGTGCAAGTGGAACCTGCAGAAGCTGGCTGAGGC : 158201

    393 : aLeuGlnProGluLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAsp :    411
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aLeuGlnProGluLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAsp
 158202 : GCTGCAGCCGGAGCTGCCCCTGGAGCTGGGCGAGGCCATCCTGGCCGAGGAGTTTGAC : 158258

    412 : AlaGluPheGlnArgHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValGlnV :    431
          .!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ThrGluPheGlnArgHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValGlnV
 158259 : ACCGAGTTCCAAAGGCACTACCTGCAGAAGATGCGAAGGAAACTGGGCCTCGTGCAGG : 158318

    432 : alGluLeuGluGluAspGlyAlaLeuValSerLysLeuLeuGluThrMetHisLeuTh :    450
          |||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||
          alGluLeuGluGluAspGlyAlaLeuValSerLysLeuLeuGlnThrMetHisLeuTh
 158319 : TGGAGCTGGAGGAAGACGGGGCGCTGGTGTCCAAGCTCCTGCAGACCATGCACCTGAC : 158375

    451 : r{G}  >>>> Target Intron 6 >>>>  {ly}AlaAspPheThrAsnThrPhe :    458
          |{|}           3717 bp           {||}|||||||||||||||||||||
          r{G}++                         ++{ly}AlaAspPheThrAsnThrPhe
 158376 : C{G}gt.........................ag{GT}GCTGACTTCACAAACACCTTC : 162116

    459 : TyrLeuLeuSerSerPheProValGluLeuGluSerProGlyLeuAlaGluPheLeuA :    478
          ||||||||||||||||||! !|||!!:! !||||||||||||||||||||||||||||
          TyrLeuLeuSerSerPheLeuValAspProGluSerProGlyLeuAlaGluPheLeuA
 162117 : TACTTGCTGAGTTCCTTCCTGGTGGATCCGGAGTCACCGGGCCTGGCGGAGTTCCTGG : 162176

    479 : laArgLeuMetGluGlnCysAlaSerLeuGluGluLeuArgLeuAlaPheArgProGl :    497
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laArgLeuMetGluGlnCysAlaSerLeuGluGluLeuArgLeuAlaPheArgProGl
 162177 : CCAGGCTGATGGAGCAGTGTGCTTCCCTGGAGGAGCTGAGGCTAGCCTTCCGGCCCCA : 162233

    498 : nMetAspPro{Ar}  >>>> Target Intron 7 >>>>  {g}GlnLeuSerMet :    505
          ||||||||||{||}            937 bp           {|}||||||||||||
          nMetAspPro{Ar}++                         ++{g}GlnLeuSerMet
 162234 : GATGGATCCC{CG}gt.........................ag{G}CAGCTGTCCATG : 163194

    506 : MetLeuMetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuMetGlyThrArgAlaG :    525
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetLeuMetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuMetGlyThrArgAlaG
 163195 : ATGTTGATGCTGGCACAGTCAAACCCGCAGCTGTTTGCGCTCATGGGCACCCGGGCAG : 163254

    526 : lyIleAlaArgGluLeuGluArgValGluGlnGlnSerArgLeuGluGlnLeuSerAl :    544
          ||||||||||||||||||||||||||||||||||||||!:!|||||||||||||||||
          lyIleAlaArgGluLeuGluArgValGluGlnGlnSerGlnLeuGluGlnLeuSerAl
 163255 : GCATCGCCAGGGAGCTGGAGCGTGTGGAGCAGCAGTCTCAGCTGGAACAGCTAAGCGC : 163311

    545 : aAlaGluLeuGlnSerArgAsnGlnGlyHisTrpAlaAspTrpLeuGlnAlaTyr{Ar :    563
          |||||||||||||||||||||||||! !|||||||||  !|||||||||||||||{||
          aAlaGluLeuGlnSerArgAsnGlnAspHisTrpAlaThrTrpLeuGlnAlaTyr{Ar
 163312 : GGCCGAGCTGCAGAGCAGGAACCAGGACCACTGGGCCACCTGGCTTCAGGCGTAC{AG : 163368

    564 : }  >>>> Target Intron 8 >>>>  {g}AlaArgLeuAspLysAspLeuGluG :    572
          }            74 bp            {|}|||||||||||||||||||||||||
          }++                         ++{g}AlaArgLeuAspLysAspLeuGluG
 163369 : }gt.........................ag{A}GCCCGGCTGGACAAGGACCTGGAGG : 163469

    573 : lyAlaGlyAspAlaAlaAlaTrpGlnAlaGluHisValArgValMetHisAlaAsnAs :    591
          ||||||||||||||||||||||||||||||||!.!||||||||||||!.!|||!:!||
          lyAlaGlyAspAlaAlaAlaTrpGlnAlaGluArgValArgValMetArgAlaSerAs
 163470 : GTGCTGGAGATGCTGCTGCCTGGCAGGCCGAGCGTGTGCGTGTGATGCGCGCCAGCAA : 163526

    592 : nProLysTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluArg :    610
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nProLysTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluArg
 163527 : CCCCAAGTATGTGCTGAGGAACTACATCGCACAGAACGCCATCGAGGCTGCCGAGCGT : 163583

    611 : GlyAspPheSerGlu  >>>> Target Intron 9 >>>>  ValArgArgValLe :    620
          |||||||||||||||            76 bp            ||||||||||||||
          GlyAspPheSerGlu+-                         ++ValArgArgValLe
 163584 : GGGGACTTCTCAGAGgc.........................agGTTCGGCGGGTACT : 163689

    621 : uLysLeuLeuGluThrProTyrHisCysGluAlaGlyAlaAlaThrAspAlaGluAla :    639
          ||||||||||||||||||||||||||||||||||||||||||||||!!: !!||||||
          uLysLeuLeuGluThrProTyrHisCysGluAlaGlyAlaAlaThrGluProGluAla
 163690 : GAAGCTACTGGAGACCCCTTACCACTGCGAGGCAGGGGCCGCCACAGAGCCCGAGGCC : 163746

    640 : ThrGluAlaAspGlyAlaAspGlyArgGlnArgSerTyrSerSerLysProProLeuT :    659
          |||||||||   ||||||  !||| !!|||||||||||||||||||||||||||||||
          ThrGluAlaArgGlyAlaThrGlyGlyGlnArgSerTyrSerSerLysProProLeuT
 163747 : ACAGAGGCCAGAGGGGCAACTGGTGGGCAGCGTTCCTACAGCAGCAAGCCCCCACTCT : 163806

    660 : rpAlaAlaGluLeuCysValThrUnkSerSer :    669
          |||||||||||||||||||||||   ||||||
          rpAlaAlaGluLeuCysValThr***SerSer
 163807 : GGGCAGCAGAACTGTGTGTGACGTGATCATCG : 163838

vulgar: SPP00000019_1.0 20 669 . gi|357434206|gb|JH378157.1|:subseq(6332340,313838) 131060 163838 + 2623 M 94 282 S 0 2 5 0 2 I 0 18614 3 0 2 S 1 1 M 69 207 S 0 2 5 0 2 I 0 4022 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1682 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1417 3 0 2 M 43 129 S 0 2 5 0 2 I 0 272 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 3713 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 933 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 52 156 5 0 2 I 0 72 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	gene	131061	163838	2623	+	.	gene_id 1 ; sequence SPP00000019_1.0 ; gene_orientation +
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	131061	131344	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	131061	131344	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	131345	131346	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	131345	149962	.	+	.	intron_id 1
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	149961	149962	.	+	.	intron_id 0 ; splice_site "NN"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	149963	150172	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	149963	150172	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	150173	150174	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	150173	154198	.	+	.	intron_id 2
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	154197	154198	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	154199	154402	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	154199	154402	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	154403	154404	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	154403	156088	.	+	.	intron_id 3
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	156087	156088	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	156089	156269	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	156089	156269	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	156270	156271	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	156270	157690	.	+	.	intron_id 4
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	157689	157690	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	157691	157821	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	157691	157821	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	157822	157823	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	157822	158097	.	+	.	intron_id 5
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	158096	158097	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	158098	158378	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	158098	158378	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	158379	158380	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	158379	162095	.	+	.	intron_id 6
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	162094	162095	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	162096	162246	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	162096	162246	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	162247	162248	.	+	.	intron_id 7 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	162247	163183	.	+	.	intron_id 7
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	163182	163183	.	+	.	intron_id 6 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	163184	163369	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	163184	163369	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	163370	163371	.	+	.	intron_id 8 ; splice_site "GT"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	163370	163443	.	+	.	intron_id 8
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	163442	163443	.	+	.	intron_id 7 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	163444	163600	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	163444	163600	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice5	163601	163602	.	+	.	intron_id 9 ; splice_site "GC"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	intron	163601	163676	.	+	.	intron_id 9
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	splice3	163675	163676	.	+	.	intron_id 8 ; splice_site "AG"
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	cds	163677	163838	.	+	.	
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	exon	163677	163838	.	+	.	insertions 0 ; deletions 0
gi|357434206|gb|JH378157.1|:subseq(6332340,313838)	exonerate:protein2genome:local	similarity	131061	163838	2623	+	.	alignment_id 1 ; Query SPP00000019_1.0 ; Align 131061 21 282 ; Align 149964 116 207 ; Align 154200 186 201 ; Align 156090 254 180 ; Align 157691 314 129 ; Align 158099 358 279 ; Align 162098 452 147 ; Align 163185 502 183 ; Align 163445 564 156 ; Align 163677 616 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis