Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000017_1.0.fa -t ./exonerate/SPP00000017_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo sapiens # Complete
        Target: gi|357434258|gb|JH378105.1|:subseq(58534805,300457) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 500
   Query range: 0 -> 145
  Target range: 149914 -> 150457

      1 : MetSerLeuLeuLeuProProLeuAlaLeuLeuLeuLeuLeuAlaAlaLeuValAlaP :     20
          :!! !!|||||||||! !! !|||  !|||||||||||||||  !  !|||!.!|||!
          LeuProLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuLeuAlaAlaL
 149915 : CTGCCACTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCTCCTGCTTCTCGCAGCGC : 149972

     21 : roAlaThrAlaAlaThrAlaTyrArg-ProAspTrpAsnArgLeuSerGlyLeuThrA :     39
           !|||.!! !!|||||||||  !! !#||||||||||||||||||!!!||||||:!!|
          euAlaAlaProAlaThrAlaAlaThr#ProAspTrpAsnArgLeuArgGlyLeuSerA
 149973 : TTGCGGCTCCAGCCACAGCCGCCACTACCGGACTGGAACCGTCTGAGAGGCCTGTCCC : 150030

     40 : rgAlaArgValGluThrCysGlyGlyUnkGlnLeuAsnArgLeuLysGluValLysAl :     58
          ||!.!|||||||||||||||||||||   |||||||||||||||||||||:!!|||||
          rgGlyArgValGluThrCysGlyGly***GlnLeuAsnArgLeuLysGluMetLysAl
 150031 : GCGGCCGGGTAGAGACCTGTGGGGGATGACAGCTGAACCGCCTAAAGGAGATGAAGGC : 150087

     59 : aPheValThrGlnAspIleProPheTyrHisAsnLeuValMetLysHisLeuProGly :     77
          |||||||||||||||||||||||||! !||||||||||||||||||||||||||||||
          aPheValThrGlnAspIleProPheCysHisAsnLeuValMetLysHisLeuProGly
 150088 : TTTCGTCACTCAGGATATTCCATTCTGTCACAACCTGGTGATGAAACATCTCCCTGGG : 150144

     78 : AlaAspProGluLeuValLeuLeuGlyArg<->ArgTyrGluGluLeuGlu  >>>>  :     94
          |||||||||:!!||||||||||||  !|||   ! !   ...|||  !|||       
          AlaAspProLysLeuValLeuLeuLeuArgGlyThrGlySerGluAlaGlu++     
 150145 : GCTGACCCCAAGCTCGTGCTGCTGCTCCGAGGAACTGGAAGTGAGGCAGAGgt..... : 150200

     95 : Target Intron 1 >>>>  ArgIleProLeuSerGluMetThrArgGluGluIle :    105
               104 bp           !.!|||! !||||||||||||||||||:!!||||||
                              ++HisIleLeuLeuSerGluMetThrArgGlnGluIle
 150201 : ....................agCACATTCTGCTCAGCGAAATGACCCGCCAAGAGATC : 150335

    106 : AsnAlaLeuValGlnGluLeuGlyPheTyrArgLysAlaAlaProAspAlaGlnValP :    125
          |||||||||||||||||||||!.!||||||||||||!.!|||||||||||||||||||
          AsnAlaLeuValGlnGluLeuAlaPheTyrArgLysValAlaProAspAlaGlnValP
 150336 : AACGCGTTGGTGCAGGAGCTCGCCTTCTACCGCAAGGTGGCGCCCGACGCTCAGGTGC : 150395

    126 : roProGluTyrValTrpAlaProAlaLysProProGluGluThrSerAspHisAlaAs :    144
          |||||||||||:!!|||||||||:!!!:!|||||||||||||||! !|||||||||||
          roProGluTyrMetTrpAlaProSerArgProProGluGluThrLeuAspHisAlaAs
 150396 : CCCCTGAGTACATGTGGGCGCCCTCTAGGCCCCCGGAGGAAACTTTGGACCATGCTGA : 150452

    145 : pLeu :    145
          ||||
          pLeu
 150453 : CCTG : 150457

vulgar: SPP00000017_1.0 0 145 . gi|357434258|gb|JH378105.1|:subseq(58534805,300457) 149914 150457 + 500 M 28 84 F 0 1 M 59 177 G 0 3 M 6 18 5 0 2 I 0 100 3 0 2 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	gene	149915	150457	500	+	.	gene_id 1 ; sequence SPP00000017_1.0 ; gene_orientation +
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	cds	149915	150197	.	+	.	
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	exon	149915	150197	.	+	.	insertions 3 ; deletions 0 ; frameshifts 1
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	splice5	150198	150199	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	intron	150198	150301	.	+	.	intron_id 1
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	splice3	150300	150301	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	cds	150302	150457	.	+	.	
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	exon	150302	150457	.	+	.	insertions 0 ; deletions 0
gi|357434258|gb|JH378105.1|:subseq(58534805,300457)	exonerate:protein2genome:local	similarity	149915	150457	500	+	.	alignment_id 1 ; Query SPP00000017_1.0 ; Align 149915 1 84 ; Align 150000 29 177 ; Align 150180 88 18 ; Align 150302 94 156
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis