Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_6_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434173|gb|JH378190.1|:subseq(4296395,301637) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 457
   Query range: 0 -> 94
  Target range: 146619 -> 152368

      1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnV :      9
          ||||||||||||||||||{|}           3374 bp           {||}||||
          MetValTyrIleSerAsn{G}++                         ++{ly}GlnV
 146620 : ATGGTTTACATCTCGAAC{G}gt.........................ag{GA}CAGG : 150018

     10 : alLeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTr :     28
          ||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||||
          alLeuAspSerArgAsnGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTr
 150019 : TGTTGGACAGCCGGAATCAGTCTCCATGGAGATTATCTTTGATAACAGATTTCTTCTG : 150075

     29 : pGlyIleAlaGluPheValValLeu{Ph}  >>>> Target Intron 2 >>>>   :     37
          |||||||||||||||||||||||||{||}           1458 bp           
          pGlyIleAlaGluPheValValLeu{Ph}++                         ++
 150076 : GGGAATAGCTGAGTTTGTGGTTTTA{TT}gt.........................ag : 151560

     38 : {e}PheLysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerS :     56
          {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
          {e}PheLysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerS
 151561 : {T}TTCAAAACCCTGCTTCAGCAAGACGTGAAAAAAAGAAGAAGCTATGGAAACTCAT : 151617

     57 : erAspSerArgTyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  :     65
          ||||||||||||||||||||||||||{||}            635 bp          
          erAspSerArgTyrAspAspGlyArg{Gl}++                         +
 151618 : CGGATTCCAGATATGATGATGGAAGA{GG}gt.........................a : 152279

     66 :  {y}ProProGlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyPro :     83
           {|}|||||||||||||||||||||||||||||||||||||||||||||!.!||||||
          +{y}ProProGlyAsnProProArgArgMetGlyArgIleAsnHisLeuHisGlyPro
 152280 : g{G}CCGCCAGGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCATGGCCCC : 152333

     84 : SerProProProMetAlaGlyGlyUnkGlyArg :     94
          ||||||||||||||||||||||||   ||||||
          SerProProProMetAlaGlyGly***GlyArg
 152334 : AGTCCTCCTCCAATGGCTGGTGGATGAGGAAGG : 152368

vulgar: SPP00000016_1.0 0 94 . gi|357434173|gb|JH378190.1|:subseq(4296395,301637) 146619 152368 + 457 M 6 18 S 0 1 5 0 2 I 0 3370 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1454 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 631 3 0 2 S 1 1 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	gene	146620	152368	457	+	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation +
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	cds	146620	146638	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	exon	146620	146638	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice5	146639	146640	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	intron	146639	150012	.	+	.	intron_id 1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice3	150011	150012	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	cds	150013	150103	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	exon	150013	150103	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice5	150104	150105	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	intron	150104	151561	.	+	.	intron_id 2
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice3	151560	151561	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	cds	151562	151645	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	exon	151562	151645	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice5	151646	151647	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	intron	151646	152280	.	+	.	intron_id 3
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	splice3	152279	152280	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	cds	152281	152368	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	exon	152281	152368	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	exonerate:protein2genome:local	similarity	146620	152368	457	+	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 146620 1 18 ; Align 150015 8 87 ; Align 151563 38 81 ; Align 152282 66 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis