Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_5_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434211|gb|JH378152.1|:subseq(14782422,300158) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 346
   Query range: 0 -> 94
  Target range: 150158 -> 149710

      1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgL :     20
          ||||||! !|||||||||  !|||||||||||||||!:!|||:!!|||||||||||||
          MetValSerIleSerAsnLysGlnValLeuAspSerGlnSerGluSerProTrpArgL
 150158 : ATGGTCTCCATCTCAAACAAACAAGTATTGGACAGCCAGAGTGAGTCTCCATGGAGAT : 150101

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeu--PhePhe :     38
          ||||||||||||||||||||||||||||||||||||||||||||||||||##||||||
          euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeu##PhePhe
 150100 : TATCTTTGATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTGTGTTTTTC : 150045

     39 : LysThrLeuLeuGlnGlnAsp  >>>> Target Intron 1 >>>>  ValLysLy :     48
          |||||||||||||||||||||            167 bp           :!!|||!:
          LysThrLeuLeuGlnGlnAsp++                         +-IleLysAr
 150044 : AAAACTTTGCTTCAGCAAGATgt.........................aaATAAAAAG : 149848

     49 : sArgArgSerTyrGlyAsnSerSerAspSerArgTyrAspAspGlyArgGlyProPro :     67
          !|||   ||||||||||||||||||||||||||||||||||||||||||||||||! !
          gArg---SerTyrGlyAsnSerSerAspSerArgTyrAspAspGlyArgGlyProLeu
 149847 : AAGA---AGCTATGGAAACTCATCTGATTCCAGATATGATGATGGAAGAGGGCCACTG : 149794

     68 : GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProP :     87
          ||||||||||||!:!|||||||||||||||!:!|||||||||||||||||||||||||
          GlyAsnProProGlnArgMetGlyArgIleSerHisLeuArgGlyProSerProProP
 149793 : GGAAACCCTCCCCAAAGAATGGGTAGAATCAGTCATCTGCGTGGCCCCAGTCCTCCTC : 149734

     88 : roMetAlaGlyGlyUnkGlyArg :     94
          |||||||||||! !   ||||||
          roMetAlaGlyGlu***GlyArg
 149733 : CAATGGCTGGTGAATAAGGAAGG : 149711

vulgar: SPP00000016_1.0 0 94 . gi|357434211|gb|JH378152.1|:subseq(14782422,300158) 150158 149710 - 346 M 36 108 F 0 2 M 9 27 5 0 2 I 0 163 3 0 2 M 4 12 G 1 0 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	gene	149711	150158	346	-	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation +
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	cds	150022	150158	.	-	.	
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	exon	150022	150158	.	-	.	insertions 0 ; deletions 0 ; frameshifts 2
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	splice5	150020	150021	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	intron	149855	150021	.	-	.	intron_id 1
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	splice3	149855	149856	.	-	.	intron_id 0 ; splice_site "AA"
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	cds	149711	149854	.	-	.	
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	exon	149711	149854	.	-	.	insertions 0 ; deletions 1
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	exonerate:protein2genome:local	similarity	149711	150158	346	-	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150159 1 108 ; Align 150049 37 27 ; Align 149855 46 12 ; Align 149843 51 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis