Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_4_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434194|gb|JH378169.1|:subseq(5169374,300236) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00065, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 341
   Query range: 0 -> 94
  Target range: 149999 -> 150278

      1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgL :     20
          ||||||||||||! !|||||||||||||||||||||!:!||| !!|||||||||||||
          MetValTyrIleLeuAsnGlyGlnValLeuAspSerGlnSer***SerProTrpArgL
 150000 : ATGGTTTACATCTTGAATGGACAAGTGTTGGACAGCCAGAGTTAGTCTCCATGGAGAT : 150057

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheLy :     39
          ||||||||||||||||||||||||||||||||!.! !!|||:!!||||||||||||||
          euSerLeuIleThrAspPhePheTrpGlyIleGly***PheMetValLeuPhePheLy
 150058 : TATCTTTGATAACAGATTTCTTCTGGGGAATAGGTTAGTTTATGGTTTTGTTTTTCAA : 150114

     40 : sThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer :     58
          ||||  !! !  !::!     !:!!!!.||||||||||||||||||||| !!||||||
          sThrAlaSerAlaArg---TyrGluAsnArgArgSerTyrGlyAsnSerProAspSer
 150115 : AACTGCTTCAGCAAGA---TATGAAAACAGAAGAAGCTATGGAAACTCACCTGATTCC : 150168

     59 : ArgTyrAspAspGlyArgGlyProProGlyAsnProProArgArgMetGlyArgIleA :     78
          |||!! ||||||||||||||||||! !||||||! !|||!:!|||||||||||||||!
          Arg***AspAspGlyArgGlyProLeuGlyAsnLeuProGlnArgMetGlyArgIleS
 150169 : AGGTAGGATGATGGTAGAGGGCCACTGGGAAACCTTCCCCAAAGAATGGGTAGAATCA : 150228

     79 : snHisLeuArgGlyProSerProProProMetAlaGlyGlyUnkGlyArg :     94
          :!|||||| !!||||||||||||||||||:!!|||.!!|||   ||||||
          erHisLeuCysGlyProSerProProProValAlaSerGly***GlyArg
 150229 : GTCATCTGTGTGGCCCCAGTCCTCCTCCAGTGGCTAGTGGATGAGGAAGG : 150278

vulgar: SPP00000016_1.0 0 94 . gi|357434194|gb|JH378169.1|:subseq(5169374,300236) 149999 150278 + 341 M 44 132 G 1 0 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434194|gb|JH378169.1|:subseq(5169374,300236)	exonerate:protein2genome:local	gene	150000	150278	341	+	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434194|gb|JH378169.1|:subseq(5169374,300236)	exonerate:protein2genome:local	cds	150000	150278	.	+	.	
gi|357434194|gb|JH378169.1|:subseq(5169374,300236)	exonerate:protein2genome:local	exon	150000	150278	.	+	.	insertions 0 ; deletions 1
gi|357434194|gb|JH378169.1|:subseq(5169374,300236)	exonerate:protein2genome:local	similarity	150000	150278	341	+	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150000 1 132 ; Align 150132 46 147
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis