Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_3_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434203|gb|JH378160.1|:subseq(10945980,300149) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00056, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 435
   Query range: 0 -> 94
  Target range: 149999 -> 150282

      1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgL :     20
          |||!.!|||||||||!!.|||||||||||||||||||||!:!||||||||||||||||
          MetAlaTyrIleSerLysGlyGlnValLeuAspSerArgAsnGlnSerProTrpArgL
 150000 : ATGGCTTACATCTCGAAGGGACAGGTGTTGGACAGCCGGAATCAGTCTCCATGGAGAT : 150057

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheLy :     39
          ||||||||||||||||||||! !|||||||||||||||||||||||||||||||||||
          euSerLeuIleThrAspPheSerTrpGlyIleAlaGluPheValValLeuPhePheLy
 150058 : TATCTTTGATAACAGATTTCTCCTGGGGAATAGCTGAGTTTGTGGTTTTATTTTTCAA : 150114

     40 : sThrLeuLeuGlnGlnAspVal-LysLysArgArgSerTyrGlyAsnSerSerAspSe :     58
          |||||||!!!||||||||||||#|||||||||||||||||||||||||||||||||||
          sThrLeuPheGlnGlnAspVal#LysLysArgArgSerTyrGlyAsnSerSerAspSe
 150115 : AACCCTGTTTCAGCAAGATGTGAAAAAAAAGAAGAAGCTATGGAAACTCATCGGATTC : 150172

     59 : rArgTyrAspAspGlyArgGlyProProGlyAsnProProArgArgMetGlyArgIle :     77
          |||||||||||||||||||! !|||||||||!:!||||||||||||||||||||||||
          rArgTyrAspAspGlyArgGluProProGlySerProProArgArgMetGlyArgIle
 150173 : CAGATACGATGATGGAAGAGAGCCACCAGGAAGCCCTCCCCGAAGAATGGGTAGAATC : 150229

     78 : AsnHisLeuArgGlyProSerProProProMetAlaGlyGlyUnkGlyArg :     94
          ||||||||||||||||||||||||||||||||||||||||||   ||||||
          AsnHisLeuArgGlyProSerProProProMetAlaGlyGlyGlyGlyArg
 150230 : AATCATCTGCGTGGCCCCAGTCCTCCTCCAATGGCTGGTGGAGGAGGAAGG : 150282

vulgar: SPP00000016_1.0 0 94 . gi|357434203|gb|JH378160.1|:subseq(10945980,300149) 149999 150282 + 435 M 46 138 F 0 1 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434203|gb|JH378160.1|:subseq(10945980,300149)	exonerate:protein2genome:local	gene	150000	150282	435	+	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434203|gb|JH378160.1|:subseq(10945980,300149)	exonerate:protein2genome:local	cds	150000	150282	.	+	.	
gi|357434203|gb|JH378160.1|:subseq(10945980,300149)	exonerate:protein2genome:local	exon	150000	150282	.	+	.	insertions 0 ; deletions 0 ; frameshifts 1
gi|357434203|gb|JH378160.1|:subseq(10945980,300149)	exonerate:protein2genome:local	similarity	150000	150282	435	+	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150000 1 138 ; Align 150139 47 144
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis