Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000014_1.0.fa -t ./exonerate/SPP00000014_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete
        Target: gi|357434257|gb|JH378106.1|:subseq(68866246,300297) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00002, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 505
   Query range: 0 -> 122
  Target range: 149923 -> 150297

      1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAla<->Val---- :     18
          |||||| !!|||||||||||||||||||||||||||||||||||||||   ..!####
          MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaValValAlaThrThr####
 149924 : ATGGCTTCCCGCGGGAGGAAGCGGAAGGCTGAGGCCGCGGTGGTCGCCACGACCGAGA : 149979

     19 : AlaGluLysArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValV :     37
          ::!||||||||||||||||||||||||||||||||||||:!!||||||||||||:!!|
          SerGluLysArgGluLysLeuAlaAsnGlyGlyGluGlyValGluGluAlaThrIleV
 149980 : AGCGAGAAGCGAGAGAAGCTGGCGAACGGCGGGGAAGGAGTGGAGGAGGCGACCATTG : 150039

     38 : alIleGluHisCysThrSerUnkArgValTyrGlyArgAsnAlaAlaAlaLeuSerGl :     56
          ||! !|||||||||||||||   |||||||||||||||||||||||||||||||||||
          alThrGluHisCysThrSer***ArgValTyrGlyArgAsnAlaAlaAlaLeuSerGl
 150040 : TTACTGAGCATTGCACTAGCTGACGCGTTTATGGGCGCAACGCCGCGGCCCTGAGCCA : 150096

     57 : nAlaLeuArgLeuGluAlaProGluLeuProValLysValAsnProThrLysProArg :     75
          ||||||||||||||||||||||||||||||||||||||||||||||.!!|||||||||
          nAlaLeuArgLeuGluAlaProGluLeuProValLysValAsnProAlaLysProArg
 150097 : GGCGCTGCGCCTGGAGGCCCCAGAACTTCCAGTAAAGGTGAACCCAGCCAAGCCCCGG : 150153

     76 : ArgGlySerPheGluValThrLeuLeu-ArgProAspGlySerSerAlaGluLeuTrp :     94
          |||||||||||||||||||||||||||#||||||||||||||||||||||||||||||
          ArgGlySerPheGluValThrLeuLeu#ArgProAspGlySerSerAlaGluLeuTrp
 150154 : AGGGGCAGCTTCGAGGTGACGCTGCTGGCGCCCGGACGGCAGCAGTGCGGAGCTCTGG : 150211

     95 : ThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluProGlnGluValV :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluProGlnGluValV
 150212 : ACTGGGATTAAGAAGGGGCCCCCGCGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGG : 150271

    115 : alGluGluLeuLysLysTyrLeuSer :    122
          ||||||||||||||||||||||||||
          alGluGluLeuLysLysTyrLeuSer
 150272 : TGGAAGAGTTGAAGAAGTACCTGTCG : 150297

vulgar: SPP00000014_1.0 0 122 . gi|357434257|gb|JH378106.1|:subseq(68866246,300297) 149923 150297 + 505 M 16 48 G 0 3 M 1 3 F 0 4 M 67 201 F 0 1 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434257|gb|JH378106.1|:subseq(68866246,300297)	exonerate:protein2genome:local	gene	149924	150297	505	+	.	gene_id 1 ; sequence SPP00000014_1.0 ; gene_orientation .
gi|357434257|gb|JH378106.1|:subseq(68866246,300297)	exonerate:protein2genome:local	cds	149924	150297	.	+	.	
gi|357434257|gb|JH378106.1|:subseq(68866246,300297)	exonerate:protein2genome:local	exon	149924	150297	.	+	.	insertions 3 ; deletions 0 ; frameshifts 5
gi|357434257|gb|JH378106.1|:subseq(68866246,300297)	exonerate:protein2genome:local	similarity	149924	150297	505	+	.	alignment_id 1 ; Query SPP00000014_1.0 ; Align 149924 1 48 ; Align 149975 17 3 ; Align 149982 18 201 ; Align 150184 85 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis