Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000014_1.0.fa -t ./exonerate/SPP00000014_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete
        Target: gi|357434243|gb|JH378120.1|:subseq(13566419,300293) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 534
   Query range: 0 -> 121
  Target range: 150362 -> 149999

      1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGluL :     20
          ||||||! !||||||||||||!:!||||||||||||||||||||||||..!.!!:!!|
          MetAlaLeuArgGlyArgLysGlnLysAlaGluAlaAlaValValAlaThrThrLysL
 150362 : ATGGCTCTCCGCGGGAGAAAACAGAAGGCTGAGGCCGCGGTGGTCGCCACGACCAAGA : 150305

     21 : ysArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValValIleGl :     39
          ||||||||||||||||||||||||||||||||:!!||||||||||||:!!||||||||
          ysArgGluLysLeuAlaAsnGlyGlyGluGlyValGluGluAlaThrIleValIleGl
 150304 : AGCGAGAAAAGTTGGCGAACGGCGGGGAGGGAGTGGAGGAGGCGACCATTGTTATTGA : 150248

     40 : uHisCysThrSerUnkArgValTyrGlyArgAsnAlaAlaAlaLeuSerGlnAlaLeu :     58
          |||||||||||||   ||||||||||||!.!|||||||||||||||||||||||||||
          uHisCysThrSer***ArgValTyrGlyHisAsnAlaAlaAlaLeuSerGlnAlaLeu
 150247 : GCATTGCACTAGCTGACGCGTTTATGGGCACAACGCCGCAGCCCTGAGCCAGGCGCTG : 150191

     59 : ArgLeuGluAlaProGluLeuProValLysValAsnProThrLysProArgArgGlyS :     78
          ||||||||||||! !||||||||||||||||||||||||.!!||||||||||||||||
          ArgLeuGluAlaLeuGluLeuProValLysValAsnProAlaLysProArgArgGlyS
 150190 : CGCCTGGAGGCCCTAGAACTTCCAGTAAAGGTGAACCCAGCCAAGCCCCGGAGGGGCA : 150131

     79 : erPheGluValThrLeuLeuArgProAspGlySerSerAlaGluLeuTrpThrGlyIl :     97
          |||||:!!||||||||||||||||||||| !!||||||||||||||||||||||||||
          erPheLysValThrLeuLeuArgProAspArgSerSerAlaGluLeuTrpThrGlyIl
 150130 : GCTTCAAGGTGACGCTGCTGCGCCCTGACCGCAGCAGTGCGGAGCTCTGGACTGGGAT : 150074

     98 : eLysLysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGlu :    116
          |||||||||||||||| !!|||||||||||||||||||||||||||||||||||||||
          eLysLysGlyProProCysLysLeuLysPheProGluProGlnGluValValGluGlu
 150073 : TAAGAAGGGGCCCCCGTGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAG : 150017

    117 : LeuLysLysTyrLeu :    121
          |||||||||||||||
          LeuLysLysTyrLeu
 150016 : TTGAAGAAGTACCTG : 150000

vulgar: SPP00000014_1.0 0 121 . gi|357434243|gb|JH378120.1|:subseq(13566419,300293) 150362 149999 - 534 M 121 363
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434243|gb|JH378120.1|:subseq(13566419,300293)	exonerate:protein2genome:local	gene	150000	150362	534	-	.	gene_id 1 ; sequence SPP00000014_1.0 ; gene_orientation .
gi|357434243|gb|JH378120.1|:subseq(13566419,300293)	exonerate:protein2genome:local	cds	150000	150362	.	-	.	
gi|357434243|gb|JH378120.1|:subseq(13566419,300293)	exonerate:protein2genome:local	exon	150000	150362	.	-	.	insertions 0 ; deletions 0
gi|357434243|gb|JH378120.1|:subseq(13566419,300293)	exonerate:protein2genome:local	similarity	150000	150362	534	-	.	alignment_id 1 ; Query SPP00000014_1.0 ; Align 150363 1 363
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis