Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000013_1.0.fa -t ./exonerate/SPP00000013_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo sapiens # Complete
        Target: gi|357434081|gb|JH378282.1|:subseq(2683177,311009) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00178, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 567
   Query range: 0 -> 124
  Target range: 149999 -> 189309

      1 : MetValAlaMetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgL :     20
          :!!|||||||||||||||||||||.!!|||!! |||:!!|||||||||  !|||||||
          ValValAlaMetAlaAlaGlyProGlyGlyTrpLeuLeuProAlaPheGlnLeuArgL
 150000 : GTGGTAGCGATGGCGGCTGGGCCGGGTGGGTGGCTGTTGCCGGCGTTTCAGCTACGGT : 150057

     21 : euLeuLeuAlaThrValLeuGlnAla  >>>> Target Intron 1 >>>>  Val :     29
          |||||!!!||||||:!!||||||!.!           10740 bp          ! !
          euLeuPheAlaThrLeuLeuGlnVal++                         ++Gly
 150058 : TGTTGTTCGCGACTTTACTTCAAGTGgt.........................agGGG : 160824

     30 : SerAlaPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerA :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerAlaPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerA
 160825 : TCTGCTTTTGGGGCAGAGTTTTCATCTGAGGCATGCAGAGAGTTAGGCTTCTCTAGCA : 160884

     50 : snLeuLeuCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspPr :     68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          snLeuLeuCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspPr
 160885 : ACTTGCTCTGCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTGCTTCAGCTGGATCC : 160941

     69 : oAspCysArgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Ta :     85
          |||||||||||||||||||||||||||||||||||||||||||||||||         
          oAspCysArgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++       
 160942 : CGATTGCAGAGGATGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGgt....... : 160994

     86 : rget Intron 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLy :     97
            9789 bp           |||||||||||||||||||||||||||||||||   ||
                            ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***Ly
 160995 : ..................agCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAA : 170817

     98 : sLeuGlyArgPheProGlnValGln{V}  >>>> Target Intron 3 >>>>  { :    106
          |||||||||||||||||||||||||{|}           18409 bp          {
          sLeuGlyArgPheProGlnValGln{V}++                         ++{
 170818 : ATTGGGAAGGTTCCCTCAAGTCCAA{G}gt.........................ag{ : 189254

    107 : al}CysProTrpPheArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys :    124
          ||}|||||| !!|||||| !!|||.!!||||||||||||||||||||||||||||||
          al}CysProArgPheArgSerCysPheLysAlaPheGlyArgGlnTrpGluHisCys
 189255 : TA}TGTCCGAGGTTCAGATCCTGTTTTAAAGCTTTTGGACGACAATGGGAACATTGC : 189309

vulgar: SPP00000013_1.0 0 124 . gi|357434081|gb|JH378282.1|:subseq(2683177,311009) 149999 189309 + 567 M 28 84 5 0 2 I 0 10736 3 0 2 M 56 168 5 0 2 I 0 9785 3 0 2 M 21 63 S 0 1 5 0 2 I 0 18405 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	gene	150000	189309	567	+	.	gene_id 1 ; sequence SPP00000013_1.0 ; gene_orientation +
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	cds	150000	150083	.	+	.	
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	exon	150000	150083	.	+	.	insertions 0 ; deletions 0
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice5	150084	150085	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	intron	150084	160823	.	+	.	intron_id 1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice3	160822	160823	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	cds	160824	160991	.	+	.	
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	exon	160824	160991	.	+	.	insertions 0 ; deletions 0
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice5	160992	160993	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	intron	160992	170780	.	+	.	intron_id 2
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice3	170779	170780	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	cds	170781	170844	.	+	.	
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	exon	170781	170844	.	+	.	insertions 0 ; deletions 0
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice5	170845	170846	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	intron	170845	189253	.	+	.	intron_id 3
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	splice3	189252	189253	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	cds	189254	189309	.	+	.	
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	exon	189254	189309	.	+	.	insertions 0 ; deletions 0
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	exonerate:protein2genome:local	similarity	150000	189309	567	+	.	alignment_id 1 ; Query SPP00000013_1.0 ; Align 150000 1 84 ; Align 160824 29 168 ; Align 170781 85 63 ; Align 189256 107 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis