Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000009_1.0.fa -t ./exonerate/SPP00000009_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: gi|357434034|gb|JH378329.1|:subseq(1,330527) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 961
   Query range: 0 -> 216
  Target range: 125233 -> 135769

      1 : MetPheGlnGlnPheGlnAlaSerCysLeuValLeuPhePheLeuValGlyPheAlaG :     20
          |||.!!!:!!!.|||||||||||||||||||||! !!!.|||||||||.!!|||||||
          MetIleArgHisPheGlnAlaSerCysLeuValProLeuPheLeuValSerPheAlaG
 125234 : ATGATCCGGCACTTCCAGGCCTCCTGTCTTGTCCCGTTGTTCCTGGTTAGCTTTGCTC : 125291

     21 : lnGlnThrLeuLysProGlnAsnArgLys  >>>> Target Intron 1 >>>>   :     30
          |||||||||||||| !!:!!:!!||||||           3429 bp           
          lnGlnThrLeuLysSerGluAspArgLys++                         ++
 125292 : AGCAGACCCTAAAGTCTGAAGATAGGAAGgt.........................ag : 128748

     31 : ValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuA :     49
          ||||||||||||!!...!||||||||||||||||||||||||||||||!!!||||||!
          ValAspCysAsnAsnAsnValThrGlyThrIleTyrGluTyrGlyAlaPheThrLeuS
 128749 : GTGGATTGCAACAACAACGTGACAGGCACCATCTATGAGTATGGAGCCTTCACCCTCA : 128807

     50 : snGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheValAs :     68
          :!||||||! !||||||||||||||||||||||||||||||! !:!!|||||||||||
          erGlyGluGlyTyrIleGlnPheLysGlnPheAlaGlyLysProIleLeuPheValAs
 128808 : GCGGCGAGGGGTACATCCAGTTCAAGCAGTTTGCAGGCAAGCCCATCCTGTTTGTCAA : 128864

     69 : nValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G}  >>>> Target Intr :     81
          |||||||.!!|||   ||||||.!!||||||||||||{|}           4542 bp
          nValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++                
 128865 : TGTAGCCACCTACTGCGGCTTGACAGCTCAGTATCCT{G}gt................ : 128906

     82 : on 2 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleV :     96
                     {||}|||||||||||||||||||||||||||!:!.!!||||||||||
                   ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysSerLeuGlyValIleV
 128907 : .........ag{AA}CTGAATGCACTCCAGGAGGAGCTGAAGAGCCTTGGAGTCATTG : 133490

     97 : alLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIl :    115
          |||||!.!||||||||||||||||||||||||||||||||||||.!!|||||||||||
          alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAlaAsnSerGluIl
 133491 : TGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGAGCAAACTCAGAGAT : 133547

    116 : eLeuLeuGlyLeu{Ly}  >>>> Target Intron 3 >>>>  {s}TyrValCys :    123
          |||||||||||||{||}            495 bp           {|}|||||| !!
          eLeuLeuGlyLeu{Ly}++                         ++{s}TyrValArg
 133548 : ACTTCTTGGTCTC{AA}gt.........................ag{G}TATGTGCGT : 134066

    124 : ProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyG :    143
          |||||||||||||||||||||!:!||||||||||||||||||||||||||||||||||
          ProGlySerGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG
 134067 : CCAGGTAGCGGCTTTGTACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTGAATGGAG : 134126

    144 : luLysGluGlnLysValPheThrPheLeuLys  >>>> Target Intron 4 >>> :    154
          ||||||||||||||||||||||||||||||||           1422 bp        
          luLysGluGlnLysValPheThrPheLeuLys++                        
 134127 : AAAAAGAACAGAAGGTCTTTACTTTCCTGAAGgt........................ : 134161

    155 : >  AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpG :    172
             |||:!!|||||||||||||||||||||||||||||||||!:!|||||||||||||
           ++AsnAlaCysProProThrSerAspLeuLeuGlySerSerAsnGlnLeuPheTrpG
 134162 : .agAACGCCTGCCCTCCGACCTCTGATCTTTTGGGCTCATCAAACCAACTCTTCTGGG : 135635

    173 : luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs :    191
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| !
          luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProHi
 135636 : AGCCTATGAAAGTCCATGACATCCGCTGGAACTTTGAAAAATTTCTGGTTGGGCCCCA : 135692

    192 : pGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSerAsp :    210
          !|||||||||||||||!.!|||||||||!::  !||||||||||||||||||||||||
          sGlyValProValMetArgTrpPheHisArgIleProValSerThrValLysSerAsp
 135693 : TGGAGTCCCTGTCATGCGCTGGTTCCACCGTATTCCAGTCAGCACAGTCAAGTCAGAC : 135749

    211 : IleLeuGluTyrLeuLys :    216
          ||||||! !|||||||||
          IleLeuAlaTyrLeuLys
 135750 : ATCCTGGCGTACCTAAAG : 135769

vulgar: SPP00000009_1.0 0 216 . gi|357434034|gb|JH378329.1|:subseq(1,330527) 125233 135769 + 961 M 29 87 5 0 2 I 0 3425 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4538 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 491 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1418 3 0 2 M 63 189
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	gene	125234	135769	961	+	.	gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	125234	125320	.	+	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	125234	125320	.	+	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	125321	125322	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	125321	128749	.	+	.	intron_id 1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	128748	128749	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	128750	128903	.	+	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	128750	128903	.	+	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	128904	128905	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	128904	133445	.	+	.	intron_id 2
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	133444	133445	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	133446	133563	.	+	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	133446	133563	.	+	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	133564	133565	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	133564	134058	.	+	.	intron_id 3
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	134057	134058	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	134059	134158	.	+	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	134059	134158	.	+	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	134159	134160	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	134159	135580	.	+	.	intron_id 4
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	135579	135580	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	135581	135769	.	+	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	135581	135769	.	+	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	similarity	125234	135769	961	+	.	alignment_id 1 ; Query SPP00000009_1.0 ; Align 125234 1 87 ; Align 128750 30 153 ; Align 133448 82 114 ; Align 134060 121 99 ; Align 135581 154 189
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete
        Target: gi|357434034|gb|JH378329.1|:subseq(1,330527) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 744
   Query range: 28 -> 220
  Target range: 109825 -> 105241

     29 : LysValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrL :     48
          :!!:!!||||||:!!!:!! !  !! !||||||||||||!!:|||! !|||:!!! !|
          GlnMetAspCysHisArgAspGlnLysGlyThrIleTyrAspTyrGluAlaIleMetL
 109825 : CAGATGGATTGTCACAGAGATCAAAAAGGCACCATCTATGACTACGAAGCCATCATGC : 109768

     49 : euAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheVa :     67
          |||||  !:!!||||||:!!!  ||||||!:!!:!!.!||||||||||||||||||||
          euAsnLysLysGluTyrValProPheLysArgTyrValGlyLysHisValLeuPheVa
 109767 : TGAATAAGAAGGAATATGTTCCCTTCAAGCGGTATGTGGGCAAGCACGTCCTCTTTGT : 109711

     68 : lAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G}  >>>> Target I :     81
          ||||||||||.!!|||   ||||||.!!||||||||||||{|}           2035
          lAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++             
 109710 : CAACGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCT{G}gt............. : 109666

     82 : ntron 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValI :     95
           bp           {||}|||||||||||||||||||||||||||  !||||||:!!:
                      ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyLeuV
 109665 : ............ag{AA}CTGAATGCACTCCAGGAGGAGCTGAAGCCCTTTGGTCTAG : 107592

     96 : leValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGl :    114
          !!||||||!.!||||||||||||||||||||||||||||||||||||  !|||!.!||
          alValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGl
 107591 : TTGTGTTGGGCTTTCCCTGCAACCAGTTTGGAAAGCAAGAACCAGGAGATAACAAGGA : 107535

    115 : uIleLeuLeuGlyLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrVal :    122
          |||||||! !||||||{||}            417 bp           {|}||||||
          uIleLeuProGlyLeu{Ly}++                         ++{s}TyrVal
 107534 : GATTCTTCCTGGGCTC{AA}gt.........................ag{G}TATGTC : 107094

    123 : CysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnG :    142
           !!||||||.!!||||||||||||!:!|||||||||||||||||||||||||||||||
          ArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnG
 107093 : CGTCCAGGGGGAGGATTTGTACCCAATTTCCAGCTTTTTGAGAAAGGAGATGTGAATG : 107034

    143 : lyGluLysGluGlnLysValPheThrPheLeuLys  >>>> Target Intron 3  :    154
          |||||||||||||||||||||||!:!|||||||||           1556 bp     
          lyGluLysGluGlnLysValPheSerPheLeuLys++                     
 107033 : GTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGgt..................... : 106996

    155 : >>>>  AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheT :    171
                :!!|||||||||! ! !!|||!!::!!||||||!!!! !!.!...:!!! !|
              ++HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleSerT
 106995 : ....agCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAATCTATATCCT : 105391

    172 : rpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr :    190
          ||!!:|||:!:|||||||||||||||||||||||||||||||||||||||||||||||
          rpAspProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr
 105390 : GGGACCCTGTCAAAGTCCATGACATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGTCC : 105334

    191 : oAspGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSer :    209
          |||||||:!!|||||||||!.!|||! !||||||||| !!||||||  !||||||:!!
          oAspGlyIleProValMetArgTrpSerHisGlnAlaThrValSerLeuValLysAla
 105333 : CGATGGAATCCCTGTCATGCGCTGGTCCCACCAGGCCACAGTCAGCTTAGTCAAGGCA : 105277

    210 : AspIleLeuGluTyrLeuLysGlnPheAsnThr :    220
          ||||||  !!  |||||||||||||||!..|||
          AspIleGluAlaTyrLeuLysGlnPheArgThr
 105276 : GACATCGAGGCCTACTTGAAGCAATTCAGAACC : 105242

vulgar: SPP00000009_1.0 28 220 . gi|357434034|gb|JH378329.1|:subseq(1,330527) 109825 105241 - 744 M 52 156 S 0 1 5 0 2 I 0 2031 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 413 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1552 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	gene	105242	109825	744	-	.	gene_id 1 ; sequence SPP00000009_1.0 ; gene_orientation +
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	109669	109825	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	109669	109825	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	109667	109668	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	107634	109668	.	-	.	intron_id 1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	107634	107635	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	107516	107633	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	107516	107633	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	107514	107515	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	107099	107515	.	-	.	intron_id 2
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	107099	107100	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	106999	107098	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	106999	107098	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice5	106997	106998	.	-	.	intron_id 3 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	intron	105443	106998	.	-	.	intron_id 3
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	splice3	105443	105444	.	-	.	intron_id 2 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	cds	105242	105442	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	exon	105242	105442	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330527)	exonerate:protein2genome:local	similarity	105242	109825	744	-	.	alignment_id 1 ; Query SPP00000009_1.0 ; Align 109826 29 156 ; Align 107632 82 114 ; Align 107098 121 99 ; Align 105443 154 201
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis