Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000006_1.0.fa -t ./exonerate/SPP00000006_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete
        Target: gi|357434197|gb|JH378166.1|:subseq(9665905,302819) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1081
   Query range: 0 -> 226
  Target range: 145346 -> 152819

      1 : MetAlaArgLeuLeuGlnAlaSerCysLeuLeuSerLeuLeuLeuAlaGlyPheValS :     20
          |||||||||||||||||||||!!!||||||||||||||||||||||||||||||||| 
          MetAlaArgLeuLeuGlnAlaCysCysLeuLeuSerLeuLeuLeuAlaGlyPheValP
 145347 : ATGGCCCGGCTGCTGCAGGCGTGCTGCCTGCTCTCCCTGCTCCTGGCCGGCTTCGTCC : 145404

     21 : erGlnSerArgGlyGlnGluLysSerLys  >>>> Target Intron 1 >>>>   :     30
          !!|||||||||||||||! !|||||||||           4569 bp           
          roGlnSerArgGlyGlnValLysSerLys++                         ++
 145405 : CGCAGAGCCGGGGACAAGTGAAGTCGAAGgt.........................ag : 150001

     31 : MetAspCysHisGlyGlyIleSerGlyThrIleTyrGluTyrGlyAlaLeuThrIleA :     49
          :!!|||||||||||||||!!:||||||||||||||||||||||||||||||||||||:
          ValAspCysHisGlyGlyMetSerGlyThrIleTyrGluTyrGlyAlaLeuThrIleA
 150002 : GTGGACTGCCATGGTGGCATGAGCGGCACCATTTATGAGTACGGAGCCCTCACCATCA : 150060

     50 : spGlyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrValLeuPheValAs :     68
          !!||||||||||||:!!||||||||||||!:!||||||||||||:!!|||||||||||
          snGlyGluGluTyrValProPheLysGlnPheAlaGlyLysTyrLeuLeuPheValAs
 150061 : ATGGGGAGGAGTATGTCCCCTTCAAGCAGTTTGCTGGCAAATACCTCCTCTTTGTCAA : 150117

     69 : nValAlaSerTyrUnkGlyLeuThrGlyGlnTyrIle{G}  >>>> Target Intr :     81
          |||||||||||||   |||||||||||||||||||||{|}           1419 bp
          nValAlaSerTyr***GlyLeuThrGlyGlnTyrIle{G}++                
 150118 : CGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACATT{G}gt................ : 150159

     82 : on 2 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValI :     96
                     {||}||||||||||||||||||||||||||||||||||||||||||:
                   ++{lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValV
 150160 : .........ag{AA}CTGAATGCACTACAGGAAGAGCTTGCCCCATTTGGTCTGGTCG : 151620

     97 : leLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIl :    115
          !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIl
 151621 : TTCTGGGCTTTCCCTGCAACCAATTTGGAAAACAGGAACCAGGAGAGAACTCGGAGAT : 151677

    116 : eLeuProThrLeu{Ly}  >>>> Target Intron 3 >>>>  {s}TyrValArg :    123
          |||||||!:!|||{||}            413 bp           {|}|||||||||
          eLeuProSerLeu{Ly}++                         ++{s}TyrValArg
 151678 : TCTCCCCAGCCTC{AA}gt.........................ag{G}TATGTCCGA : 152114

    124 : ProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG :    143
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
          ProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyA
 152115 : CCAGGTGGGGGCTTCGTCCCCAATTTCCAGCTGTTTGAGAAAGGGGATGTGAATGGAG : 152174

    144 : luLysGluGlnLysPheTyrThrPheLeuLys  >>>> Target Intron 4 >>> :    154
          !:||||||||||||||||||||||||||||||            391 bp        
          spLysGluGlnLysPheTyrThrPheLeuLys++                        
 152175 : ATAAAGAGCAGAAATTCTACACTTTCCTAAAGgt........................ : 152209

    155 : >  AsnSerCysProProThrSerGluLeuLeuGlyThrSerAspArgLeuPheTrpG :    172
             |||||||||||||||||||||||||||:!!|||||||||||||||||||||||||
           ++AsnSerCysProProThrSerGluLeuValGlyThrSerAspArgLeuPheTrpG
 152210 : .agAACTCCTGTCCTCCAACCTCGGAGCTCGTGGGTACATCTGACCGGCTCTTCTGGG : 152652

    173 : luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs
 152653 : AACCCATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGA : 152709

    192 : pGlyIleProIleMetArgTrpHisHisArgThrThrValSerAsnValLysMetAsp :    210
          ||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||
          pGlyIleProValMetArgTrpHisHisArgThrThrValSerAsnValLysMetAsp
 152710 : TGGTATACCCGTCATGCGCTGGCACCACCGGACCACGGTCAGCAACGTTAAGATGGAT : 152766

    211 : IleLeuSerTyrMetArg<->ArgGlnAlaAlaLeuGlyValLysArgLys :    226
          ||||||! !|||||||||   ||||||||||||! !! !||||||||||||
          IleLeuLeuTyrMetArgHisArgGlnAlaAla***GluValLysArgLys
 152767 : ATCCTGTTATACATGAGGCACCGGCAGGCAGCCTAGGAGGTCAAGAGGAAG : 152819

vulgar: SPP00000006_1.0 0 226 . gi|357434197|gb|JH378166.1|:subseq(9665905,302819) 145346 152819 + 1081 M 29 87 5 0 2 I 0 4565 3 0 2 M 51 153 S 0 1 5 0 2 I 0 1415 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 33 99 5 0 2 I 0 387 3 0 2 M 63 189 G 0 3 M 10 30
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	gene	145347	152819	1081	+	.	gene_id 1 ; sequence SPP00000006_1.0 ; gene_orientation +
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	cds	145347	145433	.	+	.	
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	exon	145347	145433	.	+	.	insertions 0 ; deletions 0
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice5	145434	145435	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	intron	145434	150002	.	+	.	intron_id 1
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice3	150001	150002	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	cds	150003	150156	.	+	.	
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	exon	150003	150156	.	+	.	insertions 0 ; deletions 0
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice5	150157	150158	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	intron	150157	151575	.	+	.	intron_id 2
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice3	151574	151575	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	cds	151576	151693	.	+	.	
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	exon	151576	151693	.	+	.	insertions 0 ; deletions 0
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice5	151694	151695	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	intron	151694	152106	.	+	.	intron_id 3
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice3	152105	152106	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	cds	152107	152206	.	+	.	
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	exon	152107	152206	.	+	.	insertions 0 ; deletions 0
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice5	152207	152208	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	intron	152207	152597	.	+	.	intron_id 4
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	splice3	152596	152597	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	cds	152598	152819	.	+	.	
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	exon	152598	152819	.	+	.	insertions 3 ; deletions 0
gi|357434197|gb|JH378166.1|:subseq(9665905,302819)	exonerate:protein2genome:local	similarity	145347	152819	1081	+	.	alignment_id 1 ; Query SPP00000006_1.0 ; Align 145347 1 87 ; Align 150003 30 153 ; Align 151578 82 114 ; Align 152108 121 99 ; Align 152598 154 189 ; Align 152790 217 30
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis