Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000004_1.0.fa -t ./exonerate/SPP00000004_1.0_4_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: gi|357434251|gb|JH378112.1|:subseq(8734042,300533) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 570
   Query range: 24 -> 203
  Target range: 149998 -> 150533

     25 : AlaGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIleGluA :     44
          |||||| !!! ! !!  !..!! !|||! !! !  !||||||!.!||||||:!!! !|
          AlaGlyArgGlyAlaCysGluProGlyPheProAlaGlyLysAlaLeuLeuLeuGlyA
 149999 : GCTGGCCGGGGGGCCTGTGAGCCCGGGTTCCCCGCGGGGAAGGCGCTGCTTCTCGGGA : 150056

     45 : snValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGln-MetAsnGluLeuG :     63
          ||!.!|||||||||   |||||||||! !||||||! !|||!:!#   ||||||||||
          snAlaAlaSerLeuGlyGlyThrThrGlyArgAspSerThrArg#---AsnGluLeuG
 150057 : ACGCGGCGTCCCTCGGAGGCACCACGGGCCGGGACTCCACCCGGG---AACGAGCTGC : 150111

     64 : lnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGl :     82
          ||||||||||||||||||||||||||!.!||||||||||||  !||||||||||||||
          lnArgArgLeuGlyProArgGlyLeuAlaValLeuGlyPheArgCysAsnGlnPheGl
 150112 : AGCGGCGCCTCGGGCCCCGGGGCCTGGCGGTGCTCGGCTTCAGGTGCAACCAGTTTGG : 150168

     83 : yHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgPro :    101
          |||| !!|||||||||!:!!!.|||||||||! !|||||||||:!!||||||! !|||
          yHis***GluAsnAlaArgLysGluGluIleArgAsnSerLeuGlnTyrValProPro
 150169 : ACATTAGGAGAACGCCAGGAAGGAAGAGATTCGGAATTCCCTCCAGTACGTCCCGCCT : 150225

    102 : GlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaG :    121
           !!!.!||||||||| !!!:! !!||||||!!.|||||||||||||||||| !!||||
          ArgAlaGlyPheGluSerSerValMetLeuLeuGluLysCysGluValAsnArgAlaG
 150226 : CGTGCTGGGTTCGAGTCCAGCGTCATGCTCTTGGAGAAGTGCGAGGTGAACCGTGCGG : 150285

    122 : lyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSerAspAspAl :    140
          ||:!!!.!|||||||||||| !!! !||||||||||||||||||||||||! ! !!||
          lySerArgProLeuPheAlaValProArgGluAlaLeuProAlaProSerAlaHisAl
 150286 : GGTCGCGCCCTCTCTTCGCCGTCCCGCGGGAGGCCCTGCCAGCGCCCAGCGCCCATGC : 150342

    141 : aThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysArgAsnAsp :    159
          |||||||||||||||||||! !:!!||||||||| !!!!!|||! ! !!|||!:!|||
          aThrAlaLeuMetThrAspArgGluLeuIleThrGlyThrProGlyGlyArgSerAsp
 150343 : CACTGCGCTCATGACCGACCGCGAGCTCATCACCGGGACTCCGGGAGGCCGCAGCGAT : 150399

    160 : ValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuArgArgT :    179
          |||!.!||||||||||||||||||||||||||||||||||||||||||:!!!.!||||
          ValValTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValHisArgT
 150400 : GTTGTGTGGAACTTTGAGAAGTTCCTGGTGGGCCCTGACGGTGTCCCCGTGCACAGGT : 150459

    180 : yrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLeuSerGl :    198
          ||||| !!||||||||||||||||||||||||||||||! !|||||||||||||||||
          yrSerCysArgPheGlnThrIleAspIleGluProAspThrGluAlaLeuLeuSerGl
 150460 : ACAGCTGCCGCTTCCAGACCATCGACATCGAGCCTGACACCGAAGCCCTGCTGTCCCA : 150516

    199 : nGlyProSerCysAla :    203
          ||||||||||! !|||
          nGlyProSerTyrAla
 150517 : AGGGCCCAGCTACGCC : 150533

vulgar: SPP00000004_1.0 24 203 . gi|357434251|gb|JH378112.1|:subseq(8734042,300533) 149998 150533 + 570 M 34 102 F 0 1 G 1 0 M 144 432
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434251|gb|JH378112.1|:subseq(8734042,300533)	exonerate:protein2genome:local	gene	149999	150533	570	+	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation .
gi|357434251|gb|JH378112.1|:subseq(8734042,300533)	exonerate:protein2genome:local	cds	149999	150533	.	+	.	
gi|357434251|gb|JH378112.1|:subseq(8734042,300533)	exonerate:protein2genome:local	exon	149999	150533	.	+	.	insertions 0 ; deletions 1 ; frameshifts 1
gi|357434251|gb|JH378112.1|:subseq(8734042,300533)	exonerate:protein2genome:local	similarity	149999	150533	570	+	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 149999 25 102 ; Align 150102 60 432
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis