Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000003_1.0.fa -t ./exonerate/SPP00000003_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete
        Target: gi|357434110|gb|JH378253.1|:subseq(492963,300797) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00149, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1457
   Query range: 0 -> 278
  Target range: 150833 -> 149999

      1 : MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL
 150833 : ATGCTCCGCTCCCTGCTGCTTCACTCCTTGAGGCTCTGTGCCCAGACCGCCTCGTGCC : 150776

     21 : euValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLe
 150775 : TCGTGCTCTTCCCGCGCTTCCTCGGCACGGCCTTCATGCTCTGGCTCCTCGATTTCTT : 150719

     40 : uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluVal :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||!!:|||
          uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProAspVal
 150718 : GTGTATCCGCAAGCATTTCCTGGGCCGCCGCCGCCGGGGGCAGCCCGAGCCCGATGTG : 150662

     59 : GluLeuAsnSerGluGlyGluGluValProProAspAspProProIleCysValSerA :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluLeuAsnSerGluGlyGluGluValProProAspAspProProIleCysValSerA
 150661 : GAGCTCAATAGTGAAGGCGAGGAGGTGCCCCCCGACGACCCGCCCATCTGCGTGTCCG : 150602

     79 : spAspAsnArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLe :     97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spAspAsnArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLe
 150601 : ACGACAACCGCCTCTGCACCCTGGCGTCGCTCAAGGCGGTGTGGCATGGCCAGAAGTT : 150545

     98 : uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu
 150544 : GGATTTCTTCAAACAGGCGCACGAGGGCGGTCCAGCGCCCAACTCCGAGGTGGTTCTG : 150488

    117 : ProAspGlyPheGlnSerGlnHisIleLeuAspTyrAlaGlnGlyAsnArgProLeuV :    136
          |||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||
          ProAspGlyPheGlnSerGlnArgIleLeuAspTyrAlaGlnGlyAsnArgProLeuV
 150487 : CCCGACGGCTTCCAGAGCCAGCGCATCCTCGACTACGCGCAAGGGAACCGCCCGCTGG : 150428

    137 : alLeuAsnPheGlySerCysThrUnkProProPheMetAlaArgMetSerAlaPheGl :    155
          |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
          alLeuAsnPheGlySerCysThr***ProProPheMetAlaArgMetSerAlaPheGl
 150427 : TTCTCAATTTCGGCAGCTGCACCTGACCACCGTTCATGGCGCGTATGAGCGCCTTCCA : 150371

    156 : nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu
 150370 : GCGCCTGGTCACCAAGTACCAGCGCGACGTCGACTTCCTCATCATCTACATCGAGGAA : 150314

    175 : AlaHisProSerAspGlyTrpValThrThrAspSerProTyrIleIleProGlnHisA :    194
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaHisProSerAspGlyTrpValThrThrAspSerProTyrIleIleProGlnHisA
 150313 : GCACACCCCTCCGATGGCTGGGTCACCACGGACTCCCCCTACATCATCCCGCAGCACC : 150254

    195 : rgSerLeuGluAspArgValSerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCy :    213
          |||||||||||||||||||||||||||||!:!||||||||||||||||||||||||||
          rgSerLeuGluAspArgValSerAlaAlaLysValLeuGlnGlnGlyAlaProGlyCy
 150253 : GGAGCCTGGAGGACCGGGTCAGCGCAGCGAAGGTACTGCAGCAAGGTGCACCCGGCTG : 150197

    214 : sAlaLeuValLeuAspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPhe :    232
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sAlaLeuValLeuAspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPhe
 150196 : CGCTCTGGTCCTCGACACCATGGCCAACTCCAGCAGCTCGGCTTATGGAGCCTACTTC : 150140

    233 : GluArgLeuTyrValIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA :    252
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluArgLeuTyrValIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA
 150139 : GAGCGTCTCTATGTCATCCAGAGTGGCACCATTATGTACCAGGGCGGCCGGGGCCCCG : 150080

    253 : spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi :    271
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi
 150079 : ATGGCTACCAGGTCTCTGAGCTGCGCACTTGGTTGGAGCGCTATGATGAGCAGCTGCA : 150023

    272 : sGlyAlaArgProArgArgVal :    278
          ||||||||||||||||||||||
          sGlyAlaArgProArgArgVal
 150022 : TGGTGCTCGGCCCCGGAGGGTG : 150000

vulgar: SPP00000003_1.0 0 278 . gi|357434110|gb|JH378253.1|:subseq(492963,300797) 150833 149999 - 1457 M 278 834
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434110|gb|JH378253.1|:subseq(492963,300797)	exonerate:protein2genome:local	gene	150000	150833	1457	-	.	gene_id 1 ; sequence SPP00000003_1.0 ; gene_orientation .
gi|357434110|gb|JH378253.1|:subseq(492963,300797)	exonerate:protein2genome:local	cds	150000	150833	.	-	.	
gi|357434110|gb|JH378253.1|:subseq(492963,300797)	exonerate:protein2genome:local	exon	150000	150833	.	-	.	insertions 0 ; deletions 0
gi|357434110|gb|JH378253.1|:subseq(492963,300797)	exonerate:protein2genome:local	similarity	150000	150833	1457	-	.	alignment_id 1 ; Query SPP00000003_1.0 ; Align 150834 1 834
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis