TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP001 fep15 selenoprotein precursor [Danio rerio]
(138 letters)
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a
2685 sequences; 2,608,572,064 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic ... 32 5.8
gb|JH378143.1| Saimiri boliviensis boliviensis unplaced genomic ... 32 7.6
gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic ... 32 7.6
>gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00102,
whole genome shotgun sequence
Length = 8035806
Score = 32.0 bits (71), Expect = 5.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 98 MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAP 134
M EI++L+ LGFY+++ +VP E+ P R P
Sbjct: 639418 MTRAEINALVQELGFYRKAAPDAQVPPEYVWAPSRPP 639528
>gb|JH378143.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00039,
whole genome shotgun sequence
Length = 18744880
Score = 31.6 bits (70), Expect = 7.6
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 105 SLLDSLGFYKRSEKGEEVP-EEFKHFPL 131
SLLD +G+ K KGEEVP +F H+PL
Sbjct: 3128548 SLLDPMGY*KAVAKGEEVPLAKFDHWPL 3128465
>gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001,
whole genome shotgun sequence
Length = 72162052
Score = 31.6 bits (70), Expect = 7.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 98 MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL 138
M EI++L+ L FY++ +VP E+ P R P + L
Sbjct: 58685125 MTRQEINALVQELAFYRKVAPDAQVPPEYMWAPSRPPEETL 58685247
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
.fa
Posted date: Oct 24, 2012 8:25 PM
Number of letters in database: 2,608,572,064
Number of sequences in database: 2685
Lambda K H
0.315 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,896,296
Number of Sequences: 2685
Number of extensions: 2804839
Number of successful extensions: 6229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6126
Number of HSP's gapped (non-prelim): 677
length of query: 138
length of database: 869,524,021
effective HSP length: 113
effective length of query: 25
effective length of database: 869,220,616
effective search space: 21730515400
effective search space used: 21730515400
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP002 disulfide bond formation protein A [Ciona intestinalis]
(214 letters)
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a
2685 sequences; 2,608,572,064 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic ... 35 2.4
gb|JH378109.1| Saimiri boliviensis boliviensis unplaced genomic ... 33 7.1
>gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00007,
whole genome shotgun sequence
Length = 46157118
Score = 35.0 bits (79), Expect = 2.4
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -1
Query: 90 YPYTLFGHCALEFAIKKDPSGSIQTQLQESLFKSYFTDGEYPDVETVSTVAATCG 144
YP+ ++GH + + S +I + +Q SL++S+F EY T + +A +CG
Sbjct: 32718786 YPFVMYGHLGCFYLLTIKSSDAIDSHVQISLWRSFFISLEY---ITRNGIAGSCG 32718631
>gb|JH378109.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00005,
whole genome shotgun sequence
Length = 50794693
Score = 33.5 bits (75), Expect = 7.1
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = -1
Query: 128 GEYPDVETVSTVAATCGLNREEVKSFIS--------DESNLAAVKRKAAQWSANGVSGVP 179
G Y D VST + C N E KSFIS D + ++R +AQ+ A+G+S +
Sbjct: 36662644 GFYLDSNPVSTTS*LCVHNLPEPKSFISKMGVTLL*DCYDTDNIERASAQYLAHGIS*IA 36662465
Query: 180 YFII 183
FII
Sbjct: 36662464 IFII 36662453
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
.fa
Posted date: Oct 24, 2012 8:25 PM
Number of letters in database: 2,608,572,064
Number of sequences in database: 2685
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,960,868
Number of Sequences: 2685
Number of extensions: 9066011
Number of successful extensions: 38942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 36879
Number of HSP's gapped (non-prelim): 10768
length of query: 214
length of database: 869,524,021
effective HSP length: 125
effective length of query: 89
effective length of database: 869,188,396
effective search space: 77357767244
effective search space used: 77357767244
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|298676538|ref|NP_001177311.1| selenoprotein L [Danio rerio]
(302 letters)
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a
2685 sequences; 2,608,572,064 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic ... 38 0.73
gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic ... 36 2.8
>gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00152,
whole genome shotgun sequence
Length = 4076947
Score = 37.7 bits (86), Expect = 0.73
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
Frame = -1
Query: 156 RHFGULPURDHLTELKN-SKMLLEAQSLRVLVVSYGSLEGATFWLEQTGFEFDMLLDTER 214
RHF + ++ +L K L+ + ++V+ S + + TG+ ++ +D ER
Sbjct: 2329492 RHFLCYICKKYVEDLARIPKSFLQEADVTLIVIGQSSYHHIESFCKLTGYSHEIYVDPER 2329313
Query: 215 TVYKMFGL-------GSSMSKVMKFKLMFHYSEIMAMNRTLPEMPPQFIEDLFQMGGDFV 267
+YK G+ S S +K L+ + ++ R + F D Q GG +
Sbjct: 2329312 EIYKRLGMKRGEEIASSGQSPHIKSNLL--SGSLQSLWRAVTGPLFNFQGDPAQQGGTLI 2329139
Query: 268 LEQDGKVIFSYRCKSPVDRPSATQILATVSAHYAH 302
L + F R ++ +D +L V + +
Sbjct: 2329138 LGPGNNIHFIDRDRNRLDHKPINSVLQLVGVQHVN 2329034
>gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00009,
whole genome shotgun sequence
Length = 44311105
Score = 35.8 bits (81), Expect = 2.8
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = -1
Query: 14 KELTIFGRTSLEYVEKDTANGCTLQEVNGKVLPLLGLMSAGAKFCNSLGVKNQKEAESLW 73
KE T+ +T+L++ ++ + C VLP++ M S GV + LW
Sbjct: 31236232 KEKTVVAKTALQFCARNLGHWCFRHRRESPVLPIVKTMGKVQYLSQSAGVSGKVPNGFLW 31236053
Query: 74 ERFFQ-NTEVRESVEGL-LQLEVEWDRFLKRLDV 105
Q N + S+E L L L VEW K D+
Sbjct: 31236052 LNVSQLNLSLARSLE*LTLTLTVEWRLDWKESDL 31235951
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
.fa
Posted date: Oct 24, 2012 8:25 PM
Number of letters in database: 2,608,572,064
Number of sequences in database: 2685
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 753,164,692
Number of Sequences: 2685
Number of extensions: 9168052
Number of successful extensions: 31204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 29952
Number of HSP's gapped (non-prelim): 5861
length of query: 302
length of database: 869,524,021
effective HSP length: 130
effective length of query: 172
effective length of database: 869,174,971
effective search space: 149498095012
effective search space used: 149498095012
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|301500661|ref|NP_001180398.1| selenoprotein J [Danio rerio]
(342 letters)
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a
2685 sequences; 2,608,572,064 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH378300.1| Saimiri boliviensis boliviensis unplaced genomic ... 36 3.4
gb|JH378258.1| Saimiri boliviensis boliviensis unplaced genomic ... 35 4.4
gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic ... 35 5.8
>gb|JH378300.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00196,
whole genome shotgun sequence
Length = 1944256
Score = 35.8 bits (81), Expect = 3.4
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 130 SLKGFIKNVDAGKEETGCETDTQIDGVTKLAPIV--ACYAGKPEMLEKVEEAVRVTQNND 187
++ G + + GK T C+T GV +L + AC A E E +E + + N +
Sbjct: 1156011 AVAGLCRMREKGKTNTWCQTS*LASGVVQLTAKLRRACRAVSLERKENLECIAKGSSNLN 1156190
Query: 188 LCVAETLAAARFLEHFILNGPDPKALDA 215
C+ F++ PDPK++ A
Sbjct: 1156191 FCLVWMKRQMSFVQSLFYVNPDPKSVSA 1156274
>gb|JH378258.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00154,
whole genome shotgun sequence
Length = 4032439
Score = 35.4 bits (80), Expect = 4.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -3
Query: 96 FGPGSEYDTPVNDPYRDKGAPRPQLPIEGPWRHASLKGFIKNVDAGKEETGCETDTQIDG 155
+ PGS +P P + AP P +P G W+ F+ + G +E GCE Q+ G
Sbjct: 2692019 WAPGSRVRSPAVGPGQ---APPPVVPQLGFWKSEEKNSFLLHGALG*KEEGCEARLQMPG 2691849
Query: 156 VTKLAP 161
+ L P
Sbjct: 2691848 RSHLRP 2691831
>gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00012,
whole genome shotgun sequence
Length = 39782659
Score = 35.0 bits (79), Expect = 5.8
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 105 PVNDPYRDKGAPRPQLPIEGPWRHASLKG--FIKNVDAGKEETGC 147
PV P + +PQ PI PW HA+ KG F N D G+ C
Sbjct: 38416031 PVPGPRPPTASHQPQWPIINPWSHAAFKGSSFSPNTDRGRTACLC 38415897
Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
.fa
Posted date: Oct 24, 2012 8:25 PM
Number of letters in database: 2,608,572,064
Number of sequences in database: 2685
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,038,424,391
Number of Sequences: 2685
Number of extensions: 16830132
Number of successful extensions: 64671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 58046
Number of HSP's gapped (non-prelim): 21919
length of query: 342
length of database: 869,524,021
effective HSP length: 131
effective length of query: 211
effective length of database: 869,172,286
effective search space: 183395352346
effective search space used: 183395352346
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)