TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
         (754 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic ...   152   6e-35
gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...   143   3e-32
gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic ...    81   2e-13
gb|JH378122.1| Saimiri boliviensis boliviensis unplaced genomic ...    76   9e-12
gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   5e-04

>gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00202,
               whole genome shotgun sequence
          Length = 1663455

 Score =  152 bits (385), Expect = 6e-35
 Identities = 75/78 (96%), Positives = 77/78 (98%)
 Frame = +3

Query: 435     SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 494
               SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY
Sbjct: 1065012 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 1065191

Query: 495     MEQHGVKFLRKFIPVMVQ 512
               MEQHGV+FL KFIPVMV+
Sbjct: 1065192 MEQHGVRFLWKFIPVMVR 1065245



 Score =  102 bits (254), Expect = 9e-20
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = +1

Query: 567     KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYI 623
               +SGKIPVNDVEQTNVPYVYAVGDILE KPELTPVA+QSGKLLA+RLFGASLEK  ++
Sbjct: 1075018 RSGKIPVNDVEQTNVPYVYAVGDILEGKPELTPVAVQSGKLLARRLFGASLEKVSFL 1075188



 Score =  100 bits (249), Expect = 3e-19
 Identities = 53/86 (61%), Positives = 61/86 (70%)
 Frame = +3

Query: 648     VYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGF 707
               VY    L +   +F PL +      ++ C+  ++      DRVIGFHILGPNAGEVTQGF
Sbjct: 1088358 VYFNCELAVNGFVFRPLTYW-----DSLCFVSVL-----KDRVIGFHILGPNAGEVTQGF 1088507

Query: 708     AAAMKCGLTKQLLDDTIGIHPTCGEV 733
               AAAMKCGLTKQLLDDTIGIHPTCGEV
Sbjct: 1088508 AAAMKCGLTKQLLDDTIGIHPTCGEV 1088585



 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +3

Query: 349     VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 396
               V+HNWETMTKAIQNHI SLN+GY LSLREKAVAYVNSYGEFVEHHKIK
Sbjct: 1060041 VKHNWETMTKAIQNHIRSLNFGYGLSLREKAVAYVNSYGEFVEHHKIK 1060184



 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 40/42 (95%), Positives = 40/42 (95%)
 Frame = +3

Query: 307     SWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 348
               S GLGGTCVNVGCIPKKLMHQAALLGQAL DSRKFGWEYNQQ
Sbjct: 1056864 SSGLGGTCVNVGCIPKKLMHQAALLGQALHDSRKFGWEYNQQ 1056989



 Score = 83.6 bits (205), Expect = 4e-14
 Identities = 37/46 (80%), Positives = 41/46 (89%)
 Frame = +3

Query: 611     RLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 656
               RL    + +CDYINVPTTVFTPLEYGCCGLSEEKAIE+YKKENLE+
Sbjct: 1081125 RLCNVFIFQCDYINVPTTVFTPLEYGCCGLSEEKAIEIYKKENLEV 1081262



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 38/39 (97%), Positives = 38/39 (97%)
 Frame = +1

Query: 396     KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 434
               KATNK GQETYYTAAQFVIATGERPRYLGIQGDKEYCIT
Sbjct: 1064107 KATNKNGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 1064223



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +2

Query: 655     EIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 687
               +IYHTLFWPLEWTVAGRENNTCYAKIICNKFDH
Sbjct: 1085723 QIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 1085821



 Score = 75.9 bits (185), Expect = 9e-12
 Identities = 34/38 (89%), Positives = 37/38 (97%)
 Frame = +3

Query: 212     VDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ 249
               +DDGA++QEVL EITNQKTVPNIFVNKVHVGGCDQTFQ
Sbjct: 1053858 LDDGAKIQEVLLEITNQKTVPNIFVNKVHVGGCDQTFQ 1053971



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = +1

Query: 511     VQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 542
               VQQLEKGSPGKLKVLAKSTEGTETIE VYNTV
Sbjct: 1066492 VQQLEKGSPGKLKVLAKSTEGTETIEEVYNTV 1066587



 Score = 53.9 bits (128), Expect = 3e-05
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +2

Query: 542     VLLAIGRDSCTRKIGLEKIGVKINEK 567
               VLLAIGRDSCTRKIGLEKIGVKINEK
Sbjct: 1074401 VLLAIGRDSCTRKIGLEKIGVKINEK 1074478



 Score = 52.4 bits (124), Expect = 1e-04
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 285     EAAILGKKVMVLDFVVPSPQGTSWG 309
               EAAILGKKVMVLDFVVPSPQGT WG
Sbjct: 1056051 EAAILGKKVMVLDFVVPSPQGTCWG 1056125


>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
                whole genome shotgun sequence
          Length = 19873202

 Score =  143 bits (361), Expect = 3e-32
 Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 10/129 (7%)
 Frame = +3

Query: 434      TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS 493
                TSDDLFSLPYCPGKTL+VGASYVALECAGFLAG GLDVTVMVRSILLRGFDQ+MA K+G 
Sbjct: 10539048 TSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE 10539227

Query: 494      YMEQHGVKFLRKFIPVMVQQLE----------KGSPGKLKVLAKSTEGTETIEGVYNTVL 543
                +ME+HG+KF+R+F+P+ V              KG      V+A S +  +  E +   +L
Sbjct: 10539228 HMEEHGIKFIRQFVPIKVSGFACRFVDSTFTIKGKKRVELVVAASFQHYKPAE-MLIPLL 10539404

Query: 544      LAIGRDSCT 552
                L IG  +CT
Sbjct: 10539405 LCIGIQTCT 10539431



 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = +1

Query: 688      DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733
                +RV+GFH+LGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP C EV
Sbjct: 10551961 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 10552098



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = +2

Query: 565      NEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYIN 624
                N ++GKIPV D EQTNVPY+YA+GDILE K ELTPVAIQ+G+LLAQRL+  S  K   + 
Sbjct: 10544699 NCRTGKIPVTDEEQTNVPYIYAIGDILEGKVELTPVAIQAGRLLAQRLYAGSTVKVSVVL 10544878

Query: 625      V 625
                V
Sbjct: 10544879 V 10544881



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 29/52 (55%), Positives = 42/52 (80%)
 Frame = +1

Query: 345      YNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 396
                ++  V+H+W+ M +A+QNHI SLNWGYR++LREK V Y N+YG+F+  H+IK
Sbjct: 10535926 FSYTVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK 10536081



 Score = 72.8 bits (177), Expect = 7e-11
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 309      GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQ 347
                GLGGTCVNVGCIPKKLMHQAALLGQAL DSR +GW+  +
Sbjct: 10532837 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 10532953



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = +3

Query: 618      EKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 656
                ++CDY NVPTTVFTPLEYG CGLSEEKA+E + +EN+E+
Sbjct: 10545384 KQCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 10545500



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +1

Query: 397      ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 434
                ATN KG+E  Y+A +F+IATGERPRYLGI GDKEYCI+
Sbjct: 10536481 ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS 10536594



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +3

Query: 656      IYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 687
                +YH+ FWPLEWT+  R+NN CYAKIICN  D+
Sbjct: 10547622 VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 10547717



 Score = 50.1 bits (118), Expect = 5e-04
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 542      VLLAIGRDSCTRKIGLEKIGVKINEK 567
                VLLAIGRD+CTRKIGLE +GVKINEK
Sbjct: 10543947 VLLAIGRDACTRKIGLETVGVKINEK 10544024


>gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00165,
               whole genome shotgun sequence
          Length = 3501582

 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 35/49 (71%), Positives = 39/49 (79%)
 Frame = -1

Query: 305     GTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNW 353
               GT WGLGGTCVNVGCIPKKLMHQAALLG  + D+  +GWE  Q V H+W
Sbjct: 2244522 GTRWGLGGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHDW 2244376



 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = -3

Query: 450     VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQ 485
               + GA+ VALECAGFL G GLD TVM+RSI LRGFDQ
Sbjct: 2224786 LAGAADVALECAGFLTGLGLDTTVMMRSIPLRGFDQ 2224679



 Score = 49.7 bits (117), Expect = 7e-04
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = -1

Query: 617     LEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 656
               L+ C    VPTTVFTPLEYGC GLSEE+A+  + +E +E+
Sbjct: 2208207 LQTC--FQVPTTVFTPLEYGCVGLSEEEAVARHGQERVEV 2208094


>gb|JH378122.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00018,
               whole genome shotgun sequence
          Length = 30262601

 Score = 75.9 bits (185), Expect = 9e-12
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = -3

Query: 4       VHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGC 44
               VHR VSGKRRMHLTS P A+THSPLILDMCP LNNG +TGC
Sbjct: 3888741 VHRSVSGKRRMHLTSDPTAATHSPLILDMCPRLNNGSVTGC 3888619


>gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00097,
              whole genome shotgun sequence
          Length = 8594300

 Score = 50.1 bits (118), Expect = 5e-04
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = -1

Query: 689    RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
              +V+G H+ G    E+ QGFA A+K G TK   D+T+ IHPT  E   TL
Sbjct: 555959 QVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 555813


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,275,327,255
Number of Sequences: 2685
Number of extensions: 34954479
Number of successful extensions: 161635
Number of sequences better than 1.0e-03: 5
Number of HSP's better than  0.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 117352
Number of HSP's gapped (non-prelim): 108131
length of query: 754
length of database: 869,524,021
effective HSP length: 139
effective length of query: 615
effective length of database: 869,150,806
effective search space: 534527745690
effective search space used: 534527745690
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)