TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
         (524 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic ...   116   4e-24
gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...   107   2e-21
gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic ...   100   3e-19
gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic ...    52   8e-05

>gb|JH378269.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00165,
               whole genome shotgun sequence
          Length = 3501582

 Score =  116 bits (290), Expect = 4e-24
 Identities = 54/70 (77%), Positives = 60/70 (85%)
 Frame = -3

Query: 258     QQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG 317
               QQMSS+V EHMASHGTRFLRGC PS+VRRLPDGQLQVTWED TTGKE TGTF TVLWA+G
Sbjct: 2222677 QQMSSLVTEHMASHGTRFLRGCTPSQVRRLPDGQLQVTWEDCTTGKEGTGTFSTVLWAVG 2222498

Query: 318     RVPDTRSLNL 327
               +   + +L L
Sbjct: 2222497 KGASSHTLCL 2222468



 Score =  110 bits (275), Expect = 2e-22
 Identities = 47/49 (95%), Positives = 49/49 (100%)
 Frame = -1

Query: 77      GTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDW 125
               GTRWGLGGTCVNVGCIPKKLMHQAALLGGLI+DAP+YGWEVAQPVPHDW
Sbjct: 2244522 GTRWGLGGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHDW 2244376



 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 58/121 (47%), Positives = 62/121 (51%), Gaps = 52/121 (42%)
 Frame = -1

Query: 425     EVYHAHYKPLEFTVAGRDASQCYVK----------------------------------- 449
               +VYHAHYKPLEFTV GRDASQCYVK                                   
Sbjct: 2206404 QVYHAHYKPLEFTVPGRDASQCYVKVSIPVAQGWVLRVRGRVGKVNT*GLAPPVPRRQGA 2206225

Query: 450     -----------------MVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMR 492
                                MVCLREPPQLVLGLHFLGPNAGEVTQGFA+GIK     A +MR
Sbjct: 2206224 GWTKGGRF*PSPLLGFQMVCLREPPQLVLGLHFLGPNAGEVTQGFAVGIK*VPRNAGLMR 2206045

Query: 493     T 493
               +
Sbjct: 2206044 S 2206042



 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 46/50 (92%), Positives = 49/50 (98%)
 Frame = -2

Query: 313     LWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE 362
               L++ GRVPDTRSLNLEKAGVDTSP+TQKILVDSREATSVPHIYAIGDVVE
Sbjct: 2211365 LFSSGRVPDTRSLNLEKAGVDTSPNTQKILVDSREATSVPHIYAIGDVVE 2211216



 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = -3

Query: 482     KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCXG 524
               +CG SY QVM+TVGIHPTCSEEVVKLRISKRSGLDPTVTGC G
Sbjct: 2205250 RCGVSYVQVMQTVGIHPTCSEEVVKLRISKRSGLDPTVTGC*G 2205122



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 34/42 (80%), Positives = 34/42 (80%)
 Frame = -1

Query: 385     GSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 426
               G S L     VPTTVFTPLEYGCVGLSEEEAVARHGQE VEV
Sbjct: 2208219 GPS*LQTCFQVPTTVFTPLEYGCVGLSEEEAVARHGQERVEV 2208094



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 34/59 (57%), Positives = 41/59 (69%)
 Frame = -3

Query: 223     VVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAP 281
               + GA+ VALECAGFLTG+GLDTT+MMRSIPLRGFDQ   +     +   G+  L  C P
Sbjct: 2224786 LAGAADVALECAGFLTGLGLDTTVMMRSIPLRGFDQVAPAAPAPALWPCGSVALWPCGP 2224610



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -3

Query: 363     GRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 395
               GRPELTP A+MAGRLL QRLFGGSS LMDYD V
Sbjct: 2208631 GRPELTPTAVMAGRLLAQRLFGGSSALMDYDKV 2208533



 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = -1

Query: 147     LQDRKVKYFNIKASFVDEHTVCGVAKGGKEILL 179
               L  RKVKYFN+KA FVDEHTV GVAKGGKE+ L
Sbjct: 2241300 LSFRKVKYFNVKAGFVDEHTVRGVAKGGKEVSL 2241202



 Score = 53.9 bits (128), Expect = 2e-05
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = -2

Query: 126     RKMAEAVQNHVKSLNWGHRVQLQDR 150
               RKMAEAVQNHVKSLNWGHRVQL DR
Sbjct: 2243573 RKMAEAVQNHVKSLNWGHRVQLHDR 2243499



 Score = 53.5 bits (127), Expect = 3e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -3

Query: 198     IEGALEYGITSDDIFWLKESPGKT 221
               +EGALEYGITSDDIFWLKESPGKT
Sbjct: 2236165 VEGALEYGITSDDIFWLKESPGKT 2236094


>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
                whole genome shotgun sequence
          Length = 19873202

 Score =  107 bits (266), Expect = 2e-21
 Identities = 51/78 (65%), Positives = 61/78 (78%)
 Frame = +3

Query: 207      TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIE 266
                TSDD+F L   PGKTL+VGASYVALECAGFL GIGLD T+M+RSI LRGFDQ M++ + E
Sbjct: 10539048 TSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE 10539227

Query: 267      HMASHGTRFLRGCAPSRV 284
                HM  HG +F+R   P +V
Sbjct: 10539228 HMEEHGIKFIRQFVPIKV 10539281



 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 31/39 (79%), Positives = 35/39 (89%)
 Frame = +2

Query: 81       GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 119
                GLGGTCVNVGCIPKKLMHQAALLG  +QD+ NYGW+V +
Sbjct: 10532837 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 10532953



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 32/50 (64%), Positives = 40/50 (80%)
 Frame = +2

Query: 338      TQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS 387
                T KI V   E T+VP+IYAIGD++EG+ ELTP+AI AGRLL QRL+ GS+
Sbjct: 10544708 TGKIPVTDEEQTNVPYIYAIGDILEGKVELTPVAIQAGRLLAQRLYAGST 10544857



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +1

Query: 460      VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502
                V+G H LGPNAGEVTQGFA  +KCG +  Q+  T+GIHP C+E
Sbjct: 10551967 VVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 10552095



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +1

Query: 121      VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV 167
                V HDW +M EAVQNH+ SLNWG+RV L+++KV Y N    F+  H +
Sbjct: 10535938 VKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRI 10536078



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +3

Query: 391      DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 426
                DY+NVPTTVFTPLEYG  GLSEE+AV + G+E++EV
Sbjct: 10545393 DYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 10545500


>gb|JH378306.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00202,
               whole genome shotgun sequence
          Length = 1663455

 Score =  100 bits (248), Expect = 3e-19
 Identities = 51/78 (65%), Positives = 57/78 (73%)
 Frame = +3

Query: 208     SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEH 267
               SDD+F L   PGKTLVVGASYVALECAGFL G GLD T+M+RSI LRGFDQ+M+  V  +
Sbjct: 1065012 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 1065191

Query: 268     MASHGTRFLRGCAPSRVR 285
               M  HG RFL    P  VR
Sbjct: 1065192 MEQHGVRFLWKFIPVMVR 1065245



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +3

Query: 81      GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 119
               GLGGTCVNVGCIPKKLMHQAALLG  + D+  +GWE  Q
Sbjct: 1056870 GLGGTCVNVGCIPKKLMHQAALLGQALHDSRKFGWEYNQ 1056986



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 27/53 (50%), Positives = 43/53 (81%)
 Frame = +1

Query: 340     KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDY 392
               KI V+  E T+VP++YA+GD++EG+PELTP+A+ +G+LL +RLFG S + + +
Sbjct: 1075027 KIPVNDVEQTNVPYVYAVGDILEGKPELTPVAVQSGKLLARRLFGASLEKVSF 1075185



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +3

Query: 444     SQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEE 503
               S C+V ++  R     V+G H LGPNAGEVTQGFA  +KCG +   +  T+GIHPTC E 
Sbjct: 1088421 SLCFVSVLKDR-----VIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 1088585

Query: 504     VVKLRISKRSGLDPTV 519
                 K+  SK + +D +V
Sbjct: 1088586 GNKM-FSKLASVDNSV 1088630



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 25/36 (69%), Positives = 31/36 (86%)
 Frame = +3

Query: 391     DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 426
               DY NVPTTVFTPLEYGC GLSEE+A+  + +E++EV
Sbjct: 1081155 DYINVPTTVFTPLEYGCCGLSEEKAIEIYKKENLEV 1081262



 Score = 51.6 bits (122), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +3

Query: 121     VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV 167
               V H+W  M +A+QNH++SLN+G+ + L+++ V Y N    FV+ H +
Sbjct: 1060041 VKHNWETMTKAIQNHIRSLNFGYGLSLREKAVAYVNSYGEFVEHHKI 1060181


>gb|JH378201.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00097,
              whole genome shotgun sequence
          Length = 8594300

 Score = 52.0 bits (123), Expect = 8e-05
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = -1

Query: 460    VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 508
              V+G+H  G    E+ QGFA+ +K GA+ A    TV IHPT SEE+V LR
Sbjct: 555956 VVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 555810


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,572,325,313
Number of Sequences: 2685
Number of extensions: 23918530
Number of successful extensions: 92446
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 83237
Number of HSP's gapped (non-prelim): 36232
length of query: 524
length of database: 869,524,021
effective HSP length: 136
effective length of query: 388
effective length of database: 869,158,861
effective search space: 337233638068
effective search space used: 337233638068
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)